Factsheet for Zm00001d048655_P012

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES08974	Sorghum	nucleus	94.06	93.03
TraesCS4D01G143400.3	Wheat	nucleus	78.11	76.68
HORVU4Hr1G029030.3	Barley	nucleus	77.55	76.0
GSMUA_Achr4P16510_001	Banana	nucleus	64.19	73.31
TraesCS4A01G171800.3	Wheat	nucleus	76.44	70.91
TraesCSU01G068100.3	Wheat	nucleus	76.07	70.69
Zm00001d048777_P007	Maize	nucleus	75.51	68.06
GSMUA_Achr4P11020_001	Banana	nucleus	69.39	64.93
Zm00001d007632_P003	Maize	nucleus	73.84	63.27
KXG29128	Sorghum	nucleus	58.07	49.45
Zm00001d007635_P004	Maize	nucleus	29.68	22.73
Zm00001d048364_P002	Maize	nucleus	20.78	11.48

Protein Annotations

EntrezGene:100192903	MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	ProteinID:AQK48339.1	UniProt:B4FD21	EMBL:BT035009
EMBL:EU970533	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150
GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf	InterPro:RRM_dom
InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928	TIGRFAMs:TIGR01642	InterPro:U2AF_lg
UniParc:UPI00017B6587	EnsemblPlantsGene:Zm00001d048655	EnsemblPlants:Zm00001d048655_P012	EnsemblPlants:Zm00001d048655_T012	SEG:seg	:

Description

mRNA splicing factor1 mRNA splicing factor1

Coordinates

chr4:-:2668201..2674113

Molecular Weight (calculated)

59930.3 Da

IEP (calculated)

9.147

GRAVY (calculated)

-0.866

Length

539 amino acids

Sequence
(BLAST)

001: MSDDPTNGGG GDRVEDVVRA EGETQPRDDG LSKSKDRDKD REKDKDRDRR RDRDRDRGRD RDRDRDRDRD RDRDRDKDRQ SRHHRERREQ RDRPDDHRVR
101: DSERRRERDK DGHRRHRSRS RSRGRDRRSR SRSRSKRVSG FDAPPPQAMG STFPVIPTPS QLPGSSLPNI GGMFPNMLPF GVAGQFNPLV IQPQAMTQQA
201: TRHARRVYVG GLPPSANEQT VAIYFNQVMA AIGGNTAGPG DAVLNVYINH DKKFAFVEMR SVEEASNAMA LDGIMFEGAP VKVRRPTDYN PSLAAALGPS
301: QPSPNLNLAA VGLTAGSNGG LEGPDRIFVG GLPYYFTEAQ VRELLESFGP LRGFDLVKDR ETGNSKGYAF CVYQDLTVTD IACAALNGIK MGDKTLTVRR
401: ANQGASQPRP EQESILLQAQ QQVQLQKLVY QVGALPTKVV CLTQVVTADE LKDDEEYEDI MEDMRLEAGK YGNLVKVIIP RPDPSGQPVV GVGKVFLEYA
501: DIDGAAKAKT ALHGRKFGGN PVVAVCYAED KFANGEYDG

Best Arabidopsis Sequence Match ( AT1G60900.1 )
(BLAST)

001: MMSYEGNGDG VAISTENHNE NYISLESSPF HEDSKSRESH DLKKDSSKIS EKDNENGRDK DGNKDRDREK DRDREKSRDR DREKSRDRDR DRERSKDRQR
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED

Arabidopsis Description

U2AF65BSplicing factor U2af large subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q8L716]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.