CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91800
EER95096
EER97813
EER99208
EES01601
KXG22269
KXG36793
OQU80770

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36690.1	EES01601	AT1G28360.1	21798944
AT4G36690.1	KXG22269	AT1G28360.1	21798944
AT4G36690.1	EER97813	AT2G39760.1	21798944
AT4G36690.1	EER91800	AT3G50670.1	21798944
AT4G36690.1	EER95096	AT3G50670.1	21798944
AT4G36690.1	KXG36793	AT5G49400.1	21798944
AT4G36690.1	EER99208	AT5G51910.1	21798944
AT4G36690.1	OQU80770	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12868	Canola	mitochondrion	26.38	73.25
PGSC0003DMT400040069	Potato	cytosol	35.7	72.67
CDY67096	Canola	mitochondrion	27.49	70.45
Bra040973.1-P	Field mustard	nucleus	28.44	66.18
CDX75589	Canola	mitochondrion	36.81	65.63
GSMUA_Achr4P16510_001	Banana	nucleus	44.55	59.75
VIT_13s0139g00410.t01	Wine grape	cytosol	6.32	58.82
Zm00001d048655_P012	Maize	extracellular, nucleus	49.45	58.07
EES08974	Sorghum	nucleus	49.29	57.25
TraesCS4D01G143400.3	Wheat	nucleus	48.03	55.37
CDY55407	Canola	nucleus	9.79	55.36
CDY40492	Canola	nucleus	13.11	55.33
HORVU4Hr1G029030.3	Barley	nucleus	47.55	54.73
AT1G60830.2	Thale cress	nucleus	9.48	54.05
Bra027119.1-P	Field mustard	nucleus	40.44	52.14
TraesCS4A01G171800.3	Wheat	nucleus	47.71	51.98
TraesCSU01G068100.3	Wheat	nucleus	47.55	51.9
Bra031341.1-P	Field mustard	nucleus	20.38	51.39
CDY12869	Canola	nucleus	40.13	51.21
CDY55589	Canola	mitochondrion	20.22	51.0
CDY40481	Canola	nucleus	41.07	50.39
Bra010656.1-P	Field mustard	mitochondrion, plastid	20.06	50.2
CDY40493	Canola	nucleus	22.27	50.18
KXG28995	Sorghum	nucleus	47.24	49.83
VIT_04s0023g01450.t01	Wine grape	nucleus	43.92	49.2
GSMUA_Achr4P11020_001	Banana	nucleus	44.71	49.13
Solyc02g085570.2.1	Tomato	nucleus	41.23	46.77
PGSC0003DMT400033041	Potato	nucleus	41.07	46.76
CDY35472	Canola	nucleus	40.44	46.55
Solyc02g062920.2.1	Tomato	nucleus	40.76	46.07
CDY24773	Canola	nucleus	40.28	46.03
Bra010569.1-P	Field mustard	nucleus	40.28	46.03
AT4G36690.1	Thale cress	nucleus	41.39	45.72
KRH64800	Soybean	nucleus	43.29	45.67
KRH56450	Soybean	nucleus	43.6	45.62
CDY46188	Canola	nucleus	42.65	45.45
PGSC0003DMT400000919	Potato	nucleus	43.44	45.45
Bra031477.1-P	Field mustard	nucleus	42.65	45.45
AT1G60900.1	Thale cress	nucleus	41.86	44.99
Solyc12g008750.1.1	Tomato	nucleus	42.97	44.81
Bra040940.1-P	Field mustard	nucleus	39.65	44.66
CDY03767	Canola	nucleus	42.34	44.15
CDY66742	Canola	nucleus	39.49	44.09
CDY30313	Canola	nucleus	39.97	43.03
VIT_13s0139g00390.t01	Wine grape	plasma membrane	8.21	33.33
OQU93274	Sorghum	nucleus	13.59	8.88

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	UniProt:A0A1B6PTY1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KXG29128	ProteinID:KXG29128	ProteinID:KXG29128.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR23139	PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360
SMART:SM00361	EnsemblPlantsGene:SORBI_3005G216800	SUPFAM:SSF54928	TIGRFAMs:TIGR01642	InterPro:U2AF_lg	UniParc:UPI00081ACF9A
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:70238124..70242583

Molecular Weight (calculated)

68914.1 Da

IEP (calculated)

5.123

GRAVY (calculated)

-0.260

Length

633 amino acids

Sequence
(BLAST)

001: MGGGDADAFR RVERVRREFN RLHIQPQGTT QQSNPFFLEP QAMPQQFGCF NRLVFQPHTT TQLMTREATL FTRRVYVGDL PPSANEQTIG VFFNQVMAVI
101: GGNTAGPGDA VCGICMNHEQ RFALVEFRMA EEASNAMALD GILFEGVPVK VRRPADYNLS QAAAMGPTQP SRKLNLAAVG LTAGSAGGGS EDPDRIFVGG
201: LPYYYSEAQV RDLLECIGPL RGFELVKDRE TGNSKGYAFC VYMDTTATDI ACADLNGIKM GDKILTVRRA NQSASQPRPE QESILLQAQQ QVQLQATRHA
301: RRVYVGGLPP DANEQTVAVY FNQIMAAIGG NTAGPGDAVL NVYINHDKKF ASVEMRSVEE ASNAMALDGI MFEGVPVKVR RPTDYNPSLA AALGPSQPSP
401: NLNLAAVGLT AGSGGLEDPD RIFVGGLPYY FTEAQVRELL ESFGPLRGFD LVKDKETGNS KGYAFCDYQD LTVTDIACAA LNGIKMGDKI LTVRRANQGA
501: SQPTPEQESI LLQAQQQVQM QKLAHPVGAA PTKVVCLVHV VSADELEDEV YEDIMDDMRE EARRYGNLVK VVIPRPDPSG PPVTGVGKVF LEYADVYSAT
601: RAKMALHGRK FDGKPMVANY YPELKFANLD FDG

Best Arabidopsis Sequence Match ( AT1G60900.1 )
(BLAST)

001: MMSYEGNGDG VAISTENHNE NYISLESSPF HEDSKSRESH DLKKDSSKIS EKDNENGRDK DGNKDRDREK DRDREKSRDR DREKSRDRDR DRERSKDRQR
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED

Arabidopsis Description

U2AF65BSplicing factor U2af large subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q8L716]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.