CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER94472
EES05709
EES14592
KXG29352
KXG33434
KXG38894

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28360.1	EES14592	AT1G32540.1	21798944
AT1G28360.1	EES05709	AT4G17680.1	21798944
AT1G28360.1	KXG38894	AT4G17680.1	21798944
AT1G28360.1	EER94472	AT4G26000.1	21798944
AT1G28360.1	KXG29352	AT4G26000.1	21798944
AT1G28360.1	KXG33434	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010676_P001	Maize	nucleus	82.71	86.34
Zm00001d038584_P001	Maize	nucleus	78.04	79.52
Os05t0497200-01	Rice	nucleus	52.8	59.79
TraesCS1D01G314700.1	Wheat	nucleus	50.93	59.24
TraesCS1B01G326500.1	Wheat	nucleus	50.47	58.7
TraesCS1A01G314200.1	Wheat	nucleus	50.93	57.98
HORVU1Hr1G067160.1	Barley	nucleus	51.87	57.81
EES01601	Sorghum	nucleus	44.39	53.67
GSMUA_Achr8P15820_001	Banana	nucleus	39.25	49.41
PGSC0003DMT400076408	Potato	nucleus	30.37	42.48
Solyc02g077840.1.1	Tomato	nucleus	30.37	42.21
VIT_10s0003g00130.t01	Wine grape	nucleus	28.5	40.13
KRH21385	Soybean	nucleus	26.17	34.36
CDY15674	Canola	nucleus	28.04	33.71
Bra030094.1-P	Field mustard	nucleus	28.04	33.71
CDY34107	Canola	nucleus	28.5	33.7
Bra032898.1-P	Field mustard	nucleus	28.5	33.7
KRH10926	Soybean	nucleus	26.64	33.14
CDY30806	Canola	nucleus	28.04	32.79
Bra010881.1-P	Field mustard	nucleus	28.04	32.61
CDX90145	Canola	nucleus	28.04	32.61
CDY35734	Canola	nucleus	28.04	32.43
CDX94610	Canola	nucleus	24.77	31.93
AT1G28360.1	Thale cress	nucleus	27.57	31.22
EER88863	Sorghum	nucleus	27.57	30.26
EES06418	Sorghum	nucleus	28.97	28.97
OQU82539	Sorghum	nucleus, plastid	25.23	28.42
OQU87713	Sorghum	nucleus, plastid	30.84	27.27
EES11400	Sorghum	nucleus	28.04	25.97
EES14716	Sorghum	plastid	25.23	25.71
EES14715	Sorghum	nucleus	26.17	25.69
KXG24553	Sorghum	nucleus	20.09	25.0
EES14717	Sorghum	nucleus	24.77	24.77
OQU80085	Sorghum	plastid	25.7	23.91
EES19749	Sorghum	nucleus, plastid	28.04	23.35
EES05354	Sorghum	nucleus	29.44	20.32
KXG30301	Sorghum	nucleus, plastid	23.83	18.48
EES10693	Sorghum	plastid	23.36	17.48
KXG36907	Sorghum	nucleus	25.23	16.51

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	UniProt:A0A1B6P959	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
EnsemblPlants:KXG22269	ProteinID:KXG22269	ProteinID:KXG22269.1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31677	PANTHER:PTHR31677:SF41	SMART:SM00380	EnsemblPlantsGene:SORBI_3009G184300	SUPFAM:SSF54171	UniParc:UPI00081AD5C1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:53747518..53748885

Molecular Weight (calculated)

22450.8 Da

IEP (calculated)

10.609

GRAVY (calculated)

-0.372

Length

214 amino acids

Sequence
(BLAST)

001: MDWDMRGGGG GHGGAVGDGG GGPGGRGLTV GGVAVGGGGD QHQQRVEAHY RGVRKRPWGR YAAEIRDPWR KTRVWLGTYD TPVEAAMAYD RAAVALRGSK
101: ARLNFTAGRG ACPRATPVQA RPFPLSHPAA PGGHFVGGLD VTHSSPWHVL YLPPSRLHHQ AVAVPPPMPP LVAVAEDVVA SSKPSTALEL RTGPKALPFD
201: LNEPPSLMFG SRSP

Best Arabidopsis Sequence Match ( AT1G28360.1 )
(BLAST)

001: MASTTCAREV HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARFLRG IKAKTNFPSP LSLDLNHLPS APSAATAAAN NQPHQHQQLW
101: FAAPPPVPPS SDHHHQHHRI FLRTGVLNDK TSDYSSTEAP LYFTSSPNTA TSSPGYQVVG FPMMNSSPSP VTVRRGLAID LNEPPPLWL

Arabidopsis Description

ERF12Ethylene-responsive transcription factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q94ID6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.