CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026271_P001	Maize	nucleus, plastid	79.65	82.88
Zm00001d002364_P001	Maize	nucleus, plastid	77.92	81.08
TraesCS2A01G427700.1	Wheat	nucleus	72.29	79.52
TraesCS2D01G425700.1	Wheat	nucleus	72.73	77.42
TraesCS2B01G448100.1	Wheat	nucleus	71.43	75.34
Os04t0610400-01	Rice	nucleus	71.86	74.77
HORVU2Hr1G099890.2	Barley	nucleus	61.04	64.98
GSMUA_Achr8P33590_001	Banana	nucleus	41.99	51.87
Bra030095.1-P	Field mustard	nucleus	36.36	50.0
Bra032900.1-P	Field mustard	nucleus	34.2	50.0
CDY15673	Canola	nucleus	36.36	50.0
CDY70175	Canola	nucleus	36.36	50.0
Bra010880.1-P	Field mustard	nucleus	36.8	49.42
CDX90146	Canola	nucleus	36.8	49.42
KRH26242	Soybean	nucleus	27.27	48.84
CDY69368	Canola	nucleus	36.36	48.84
CDY70796	Canola	nucleus	33.77	48.45
CDY34105	Canola	nucleus	32.9	48.1
EES14717	Sorghum	nucleus	43.72	47.2
KRH55195	Soybean	nucleus	37.23	46.99
Bra032901.1-P	Field mustard	nucleus	32.9	46.91
CDY34104	Canola	nucleus	32.9	46.91
EES14715	Sorghum	nucleus	43.29	45.87
EES14716	Sorghum	plastid	40.69	44.76
OQU82539	Sorghum	nucleus, plastid	36.36	44.21
OQU80085	Sorghum	plastid	42.86	43.04
CDY61906	Canola	cytosol	24.24	41.48
KRH22040	Soybean	nucleus	34.2	40.93
KRH27281	Soybean	nucleus	33.77	40.41
VIT_19s0014g02240.t01	Wine grape	nucleus	37.66	39.55
AT1G28370.2	Thale cress	mitochondrion, nucleus, plastid	33.77	38.24
EES06418	Sorghum	nucleus	35.06	37.85
EER88863	Sorghum	nucleus	31.6	37.44
OQU87713	Sorghum	nucleus, plastid	38.53	36.78
EES01601	Sorghum	nucleus	28.14	36.72
EES19749	Sorghum	nucleus, plastid	39.83	35.8
KXG22269	Sorghum	nucleus	25.97	28.04
KXG24553	Sorghum	nucleus	20.35	27.33
EES10693	Sorghum	plastid	24.68	19.93
KXG30301	Sorghum	nucleus, plastid	23.81	19.93
EES05354	Sorghum	nucleus	25.97	19.35
KXG36907	Sorghum	nucleus	25.54	18.04

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	EntrezGene:8063947	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
UniProt:C5YFM4	InterPro:DNA-bd_dom_sf	EnsemblPlants:EES11400	ProteinID:EES11400	ProteinID:EES11400.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847
PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31677	PANTHER:PTHR31677:SF17	SMART:SM00380
EnsemblPlantsGene:SORBI_3006G210300	SUPFAM:SSF54171	unigene:Sbi.6204	UniParc:UPI0001A86ED4	RefSeq:XP_002447072.1	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:55996537..55997629

Molecular Weight (calculated)

23786.5 Da

IEP (calculated)

9.361

GRAVY (calculated)

-0.077

Length

231 amino acids

Sequence
(BLAST)

001: MAPKNALPAA SAVTDGMMEP RFRGVRKRPW GRYAAEIRDP ARKARVWLGT FDTAEAAARA YDAAALHFRG PKAKTNFPVA FAAAAHAQAL ALPLPLPPPP
101: KKLAVSPSSS TVESSSRDSP ATPPRARSPS PAPTVMPAPS LDLCLGMPAM VAAQPFLFLD PRLAVTVAVP APVACRPTAV AAGAKKQTAP TSCGGDEEQS
201: DTGSSSSVVD ASPEAVCVGF DLNMPPPAEV A

Best Arabidopsis Sequence Match ( AT3G15210.1 )
(BLAST)

001: MAKMGLKPDP ATTNQTHNNA KEIRYRGVRK RPWGRYAAEI RDPGKKTRVW LGTFDTAEEA ARAYDTAARD FRGAKAKTNF PTFLELSDQK VPTGFARSPS
101: QSSTLDCASP PTLVVPSATA GNVPPQLELS LGGGGGGSCY QIPMSRPVYF LDLMGIGNVG RGQPPPVTSA FRSPVVHVAT KMACGAQSDS DSSSVVDFEG
201: GMEKRSQLLD LDLNLPPPSE QA

Arabidopsis Description

ERF4Ethylene-responsive transcription factor 4 [Source:UniProtKB/Swiss-Prot;Acc:O80340]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.