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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • nucleus 4
  • mitochondrion 2
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:mitochondrion, nucleus, plastid, secretory
BaCelLo:secretory
EpiLoc:nucleus
iPSORT:mitochondrion
MultiLoc:nucleus
Plant-mPloc:nucleus
Predotar:plastid
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d043205_P001 Maize nucleus 90.08 91.98
Zm00001d012585_P001 Maize nucleus 84.3 84.65
Os01t0797600-01 Rice nucleus, plastid 77.27 79.57
TraesCS3B01G357500.1 Wheat nucleus, plastid 79.75 79.42
HORVU3Hr1G078150.2 Barley nucleus, plastid 78.93 79.25
HORVU0Hr1G007050.2 Barley nucleus, plastid 78.93 79.25
TraesCS3A01G328000.1 Wheat nucleus 79.75 78.14
TraesCS3D01G321500.1 Wheat nucleus 79.34 78.05
EES19749 Sorghum nucleus, plastid 66.53 62.65
KRH32582 Soybean nucleus 21.9 58.24
GSMUA_Achr8P03550_001 Banana nucleus 43.8 49.07
KRH10927 Soybean nucleus 42.98 47.49
PGSC0003DMT400068959 Potato nucleus 43.39 46.88
Solyc07g053740.1.1 Tomato nucleus 43.39 46.67
VIT_12s0028g03270.t01 Wine grape nucleus 40.08 45.97
KRH21384 Soybean nucleus 42.15 45.95
Solyc10g009110.1.1 Tomato nucleus 38.43 41.89
PGSC0003DMT400058751 Potato nucleus 38.84 41.59
CDX89866 Canola nucleus 30.58 41.11
Bra015266.1-P Field mustard nucleus 30.17 39.89
GSMUA_Achr10P... Banana nucleus 36.36 39.64
OQU82539 Sorghum nucleus, plastid 30.99 39.47
CDY18185 Canola nucleus 29.34 39.44
EES11400 Sorghum nucleus 36.78 38.53
Solyc03g006320.1.1 Tomato nucleus, plastid 33.88 37.96
EES14717 Sorghum nucleus 31.82 35.98
EES01601 Sorghum nucleus 26.03 35.59
EES14716 Sorghum plastid 30.17 34.76
EES14715 Sorghum nucleus 30.99 34.4
PGSC0003DMT400033391 Potato nucleus 32.64 34.35
EES06418 Sorghum nucleus 30.17 34.11
KRH45546 Soybean nucleus 25.21 33.89
EER88863 Sorghum nucleus 27.27 33.85
OQU80085 Sorghum plastid 31.41 33.04
PGSC0003DMT400035731 Potato nucleus 38.02 30.98
KXG22269 Sorghum nucleus 27.27 30.84
KXG24553 Sorghum nucleus 19.01 26.74
KXG30301 Sorghum nucleus, plastid 24.79 21.74
EES05354 Sorghum nucleus 26.45 20.65
EES10693 Sorghum plastid 23.14 19.58
KXG36907 Sorghum nucleus 22.31 16.51
Protein Annotations
MapMan:15.5.7.1Gene3D:3.30.730.10EntrezGene:8082391ProteinID:AFP33249.1ProteinID:AFP33253.1ProteinID:AIS25787.1
InterPro:AP2/ERF_domInterPro:AP2/ERF_dom_sfUniProt:C5XME9InterPro:DNA-bd_dom_sfGO:GO:0000003GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0006629
GO:GO:0006950GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009409
GO:GO:0009414GO:GO:0009605GO:GO:0009607GO:GO:0009611GO:GO:0009625GO:GO:0009628
GO:GO:0009651GO:GO:0009653GO:GO:0009719GO:GO:0009723GO:GO:0009733GO:GO:0009735
GO:GO:0009737GO:GO:0009751GO:GO:0009753GO:GO:0009791GO:GO:0009987GO:GO:0010311
GO:GO:0010337GO:GO:0010364GO:GO:0010728GO:GO:0040007GO:GO:0043565GO:GO:0044212
GO:GO:0045892GO:GO:0080027GO:GO:0080113GO:GO:0080141GO:GO:2000068InterPro:IPR001471
InterPro:IPR036955EMBL:JF714972EnsemblPlants:OQU87713ProteinID:OQU87713ProteinID:OQU87713.1PFAM:PF00847
PRINTS:PR00367PFscan:PS51032PANTHER:PTHR31677PANTHER:PTHR31677:SF19SMART:SM00380EnsemblPlantsGene:SORBI_3003G324400
SUPFAM:SSF54171unigene:Sbi.10655TMHMM:TMhelixUniParc:UPI0001A84480RefSeq:XP_002456479.1SEG:seg
Description
hypothetical protein
Coordinates
chr3:+:65109839..65110908
Molecular Weight (calculated)
24933.5 Da
IEP (calculated)
9.371
GRAVY (calculated)
-0.160
Length
242 amino acids
Sequence
(BLAST)
001: MAPRVADKSP LPPATGLGLG VGGVVGGVGM GPHYRGVRKR PWGRFAAEIR DPAKKSRVWL GTYDTAEEAA KAYDAAAREF RGAKAKTNFP FPSQCAVAAG
101: GAGSPCSNST VDSSGGASGC AVQAPMQAMP LPPALDLDLF HRAAAVNAVT AGGMRFPFKG YPVARPTPHQ YFFYEQAAAA AAAAAGYRML KVAPPPVTVA
201: AVAQSDSDSS SVVDHTPSPP AVTAKKEVGF ELDLNWPPPA EN
Best Arabidopsis Sequence Match ( AT5G44210.1 )
(BLAST)
001: MAPRQANGRS IAVSEGGGGK TMTMTTMRKE VHFRGVRKRP WGRYAAEIRD PGKKTRVWLG TFDTAEEAAR AYDTAAREFR GSKAKTNFPL PGESTTVNDG
101: GENDSYVNRT TVTTAREMTR QRFPFACHRE RKVVGGYASA GFFFDPSRAA SLRAELSRVC PVRFDPVNIE LSIGIRETVK VEPRRELNLD LNLAPPVVDV
Arabidopsis Description
ERF9Ethylene-responsive transcription factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE67]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.