Factsheet for VIT_12s0028g03270.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g053740.1.1	Tomato	nucleus	55.45	52.0
PGSC0003DMT400068959	Potato	nucleus	54.5	51.34
VIT_10s0003g00140.t01	Wine grape	nucleus	54.5	50.66
VIT_19s0014g02240.t01	Wine grape	nucleus	48.82	46.82
Solyc10g009110.1.1	Tomato	nucleus	48.34	45.95
PGSC0003DMT400058751	Potato	nucleus	48.34	45.13
GSMUA_Achr8P03550_001	Banana	nucleus	45.5	44.44
CDX89866	Canola	nucleus	36.02	42.22
Zm00001d000339_P001	Maize	nucleus	46.45	42.06
Os05t0497300-01	Rice	nucleus	46.92	41.95
Bra015266.1-P	Field mustard	nucleus	36.02	41.53
Zm00001d043205_P001	Maize	nucleus	46.45	41.35
Os01t0797600-01	Rice	nucleus, plastid	45.97	41.28
TraesCS1B01G326600.1	Wheat	nucleus	46.92	41.25
TraesCS3B01G357500.1	Wheat	nucleus, plastid	47.39	41.15
TraesCS1A01G314300.1	Wheat	nucleus	45.97	41.1
TraesCS1D01G314800.1	Wheat	nucleus	45.97	41.1
Zm00001d038585_P001	Maize	mitochondrion, nucleus	42.65	40.91
VIT_10s0003g00130.t01	Wine grape	nucleus	29.38	40.79
CDY18185	Canola	nucleus	34.6	40.56
EES19749	Sorghum	nucleus, plastid	49.29	40.47
Zm00001d012585_P001	Maize	nucleus	45.97	40.25
HORVU3Hr1G078150.2	Barley	nucleus, plastid	45.97	40.25
HORVU0Hr1G007050.2	Barley	nucleus, plastid	45.97	40.25
OQU87713	Sorghum	nucleus, plastid	45.97	40.08
TraesCS3A01G328000.1	Wheat	nucleus	46.92	40.08
VIT_07s0141g00690.t01	Wine grape	nucleus	31.75	39.88
TraesCS3D01G321500.1	Wheat	nucleus	46.45	39.84
GSMUA_Achr10P...	Banana	nucleus	39.34	37.39
PGSC0003DMT400035731	Potato	nucleus	52.61	37.37
VIT_14s0081g00520.t01	Wine grape	nucleus	29.38	36.26
VIT_12s0059g01460.t01	Wine grape	nucleus	34.6	35.78
Solyc03g006320.1.1	Tomato	nucleus, plastid	36.49	35.65
PGSC0003DMT400033391	Potato	nucleus	36.49	33.48
VIT_19s0090g01080.t01	Wine grape	nucleus	34.12	27.91
VIT_14s0068g00860.t01	Wine grape	nucleus	28.44	23.08
VIT_00s0291g00030.t01	Wine grape	nucleus	28.91	14.73

Protein Annotations

EntrezGene:100242144	wikigene:100242144	MapMan:15.5.7.1	Gene3D:3.30.730.10	EMBL:AM467168	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ProteinID:CAN63728	ProteinID:CAN63728.1	ProteinID:CBI21884	ProteinID:CBI21884.3	InterPro:DNA-bd_dom_sf
UniProt:E0CTG9	EMBL:FN595235	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	EntrezGene:LOC100242144	wikigene:LOC100242144	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31677	PANTHER:PTHR31677:SF17	SMART:SM00380	SUPFAM:SSF54171	TIGR:TC53821
UniParc:UPI000198439A	ArrayExpress:VIT_12s0028g03270	EnsemblPlantsGene:VIT_12s0028g03270	EnsemblPlants:VIT_12s0028g03270.t01	unigene:Vvi.9709	RefSeq:XP_002276215
RefSeq:XP_002276215.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:+:4004229..4005132

Molecular Weight (calculated)

22855.7 Da

IEP (calculated)

7.185

GRAVY (calculated)

-0.458

Length

211 amino acids

Sequence
(BLAST)

001: MALKEKVKEG VKAKEPHFRG VRKRPWGRYA AEIRDPTKKS RVWLGTFDTA EEAAQAYDAA AREFRGSKAK TNFPLPNEVL PFPNTDNLTR SPSPSSTVES
101: SSPHAPLELD LTRRLGSSDG GFPFHYQPHV VNSAAVAGVW PHARPVLFLD AFVGAEGFRV NPVTVAYDGG FGSPVQSESD SSSVVDSVQH ESSGATRVLG
201: LDLNFPPPLE A

Best Arabidopsis Sequence Match ( AT5G44210.1 )
(BLAST)

001: MAPRQANGRS IAVSEGGGGK TMTMTTMRKE VHFRGVRKRP WGRYAAEIRD PGKKTRVWLG TFDTAEEAAR AYDTAAREFR GSKAKTNFPL PGESTTVNDG
101: GENDSYVNRT TVTTAREMTR QRFPFACHRE RKVVGGYASA GFFFDPSRAA SLRAELSRVC PVRFDPVNIE LSIGIRETVK VEPRRELNLD LNLAPPVVDV

Arabidopsis Description

ERF9Ethylene-responsive transcription factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE67]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.