Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G13910.1 | Thale cress | nucleus | 45.77 | 56.4 |
| CDX70526 | Canola | nucleus | 43.85 | 53.77 |
| CDX78545 | Canola | nucleus | 43.46 | 53.3 |
| Bra006222.1-P | Field mustard | nucleus | 43.08 | 53.08 |
| KRH70088 | Soybean | nucleus | 51.54 | 48.91 |
| KRH08427 | Soybean | nucleus | 50.77 | 48.18 |
| KRH06790 | Soybean | nucleus | 43.46 | 48.09 |
| PGSC0003DMT400005596 | Potato | nucleus, plastid | 30.0 | 39.8 |
| Os02t0520000-00 | Rice | nucleus | 35.38 | 38.49 |
| HORVU2Hr1G071470.1 | Barley | plastid | 38.85 | 38.4 |
| TraesCS2D01G286900.1 | Wheat | plastid | 38.46 | 38.17 |
| TraesCS2B01G305500.1 | Wheat | plastid | 38.46 | 38.17 |
| TraesCS2A01G288700.1 | Wheat | plastid | 38.46 | 38.17 |
| Os04t0399800-00 | Rice | nucleus | 42.31 | 37.67 |
| Zm00001d025298_P001 | Maize | plastid | 38.85 | 37.13 |
| Zm00001d003871_P001 | Maize | plastid | 38.08 | 36.53 |
| GSMUA_Achr10P... | Banana | nucleus | 36.54 | 36.4 |
| GSMUA_Achr3P02360_001 | Banana | nucleus | 36.92 | 35.69 |
| Zm00001d016623_P001 | Maize | nucleus | 36.15 | 35.47 |
| EES10693 | Sorghum | plastid | 38.85 | 35.31 |
| KXG30301 | Sorghum | nucleus, plastid | 37.31 | 35.14 |
| Bra023440.1-P | Field mustard | nucleus | 43.08 | 33.23 |
| PGSC0003DMT400005585 | Potato | nucleus, plastid | 36.54 | 32.76 |
| VIT_07s0141g00690.t01 | Wine grape | nucleus | 21.15 | 32.74 |
| CDX91091 | Canola | nucleus | 42.31 | 32.35 |
| Solyc11g045680.1.1 | Tomato | nucleus, plastid | 35.77 | 31.96 |
| CDY72607 | Canola | nucleus | 39.62 | 31.89 |
| Bra008793.1-P | Field mustard | nucleus | 39.23 | 31.78 |
| Solyc11g045690.1.1 | Tomato | nucleus, plastid | 36.54 | 31.46 |
| CDX85621 | Canola | nucleus | 41.15 | 31.29 |
| VIT_10s0003g00130.t01 | Wine grape | nucleus | 18.08 | 30.92 |
| VIT_14s0081g00520.t01 | Wine grape | nucleus | 19.23 | 29.24 |
| VIT_12s0028g03270.t01 | Wine grape | nucleus | 23.08 | 28.44 |
| VIT_12s0059g01460.t01 | Wine grape | nucleus | 21.15 | 26.96 |
| VIT_19s0014g02240.t01 | Wine grape | nucleus | 21.92 | 25.91 |
| VIT_10s0003g00140.t01 | Wine grape | nucleus | 20.77 | 23.79 |
| VIT_19s0090g01080.t01 | Wine grape | nucleus | 20.38 | 20.54 |
| VIT_00s0291g00030.t01 | Wine grape | nucleus | 25.38 | 15.94 |
Protein Annotations
| EntrezGene:100244684 | wikigene:100244684 | MapMan:15.5.7.1 | Gene3D:3.30.730.10 | EMBL:AM436385 | InterPro:AP2/ERF_dom |
| InterPro:AP2/ERF_dom_sf | ProteinID:CAN80471 | ProteinID:CAN80471.1 | ProteinID:CCB46960 | ProteinID:CCB46960.1 | InterPro:DNA-bd_dom_sf |
| UniProt:F6H417 | EMBL:FN595232 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009739 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010030 |
| GO:GO:0016787 | InterPro:IPR001471 | InterPro:IPR036955 | EntrezGene:LOC100244684 | wikigene:LOC100244684 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31677 | PANTHER:PTHR31677:SF9 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0001984A2B | ArrayExpress:VIT_14s0068g00860 | EnsemblPlantsGene:VIT_14s0068g00860 | EnsemblPlants:VIT_14s0068g00860.t01 | RefSeq:XP_002276221 | RefSeq:XP_002276221.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr14:-:24626255..24627037
Molecular Weight (calculated)
28976.9 Da
IEP (calculated)
4.584
GRAVY (calculated)
-0.841
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPSTSKSKK KQTQQQETSG RFLGVRRRPW GRYAAEIRDP STKERHWLGT FDTAEEAALA YDRAARSMRG SRARTNFVYS DMPPGSSVTS IISPDESLPD
101: FSSHFVPPTT QPNPNPNLFF NPTECHQFAF QGQFPTETNS WDYSNLYQEQ PLVDNMNGTT TTTNNQFYNA NDLPPFPSQV SDQLPSSGFE MEQATWGDST
201: SLAGFSEQRT SPNEFDSAGG GSYLGFDSTQ YVHSPLFGRM PPVSDTPPDG FDLGSSSYFF
101: FSSHFVPPTT QPNPNPNLFF NPTECHQFAF QGQFPTETNS WDYSNLYQEQ PLVDNMNGTT TTTNNQFYNA NDLPPFPSQV SDQLPSSGFE MEQATWGDST
201: SLAGFSEQRT SPNEFDSAGG GSYLGFDSTQ YVHSPLFGRM PPVSDTPPDG FDLGSSSYFF
001: MNTTSSKSKK KQDDQVGTRF LGVRRRPWGR YAAEIRDPTT KERHWLGTFD TAEEAALAYD RAARSMRGTR ARTNFVYSDM PPSSSVTSIV SPDDPPPPPP
101: PPAPPSNDPV DYMMMFNQYS STDSPMLQPH CDQVDSYMFG GSQSSNSYCY SNDSSNELPP LPSDLSNSCY SQPQWTWTGD DYSSEYVHSP MFSRMPPVSD
201: SFPQGFNYFG S
101: PPAPPSNDPV DYMMMFNQYS STDSPMLQPH CDQVDSYMFG GSQSSNSYCY SNDSSNELPP LPSDLSNSCY SQPQWTWTGD DYSSEYVHSP MFSRMPPVSD
201: SFPQGFNYFG S
Arabidopsis Description
LEPLEP [Source:UniProtKB/TrEMBL;Acc:A0A178UQP2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.