Factsheet for GSMUA_Achr10P17370_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
nucleus 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P02360_001	Banana	nucleus	68.58	66.54
TraesCS2B01G305500.1	Wheat	plastid	53.64	53.44
TraesCS2A01G288700.1	Wheat	plastid	53.26	53.05
TraesCS2D01G286900.1	Wheat	plastid	52.87	52.67
HORVU2Hr1G071470.1	Barley	plastid	52.87	52.47
Zm00001d025298_P001	Maize	plastid	54.02	51.84
Zm00001d003871_P001	Maize	plastid	53.26	51.29
EES10693	Sorghum	plastid	55.17	50.35
Os04t0399800-00	Rice	nucleus	54.02	48.29
GSMUA_Achr7P00350_001	Banana	nucleus	18.77	44.55
GSMUA_AchrUn_...	Banana	nucleus	18.01	43.52
AT5G13910.1	Thale cress	nucleus	32.95	40.76
CDX78545	Canola	nucleus	31.8	39.15
Bra006222.1-P	Field mustard	nucleus	31.42	38.86
CDX70526	Canola	nucleus	31.42	38.68
GSMUA_Achr6P35320_001	Banana	nucleus	21.07	38.46
KRH06790	Soybean	nucleus	33.72	37.45
VIT_14s0068g00860.t01	Wine grape	nucleus	36.4	36.54
KRH08427	Soybean	nucleus	37.93	36.13
KRH70088	Soybean	nucleus	37.55	35.77
PGSC0003DMT400005596	Potato	nucleus, plastid	26.44	35.2
GSMUA_Achr7P17910_001	Banana	nucleus	21.84	35.19
GSMUA_Achr7P03640_001	Banana	nucleus	21.46	33.73
GSMUA_Achr3P13010_001	Banana	nucleus	19.54	33.33
GSMUA_Achr1P25890_001	Banana	nucleus	20.31	33.33
GSMUA_Achr8P33590_001	Banana	nucleus	23.37	32.62
GSMUA_Achr4P04060_001	Banana	mitochondrion	19.16	31.65
GSMUA_AchrUn_...	Banana	nucleus	21.07	31.07
GSMUA_Achr6P00240_001	Banana	nucleus	20.31	30.81
GSMUA_Achr8P15830_001	Banana	nucleus	22.99	30.15
GSMUA_Achr8P06870_001	Banana	nucleus	21.07	29.73
GSMUA_Achr3P29290_001	Banana	nucleus	18.01	29.56
GSMUA_Achr4P11430_001	Banana	nucleus	18.39	29.27
GSMUA_Achr6P01440_001	Banana	nucleus	20.69	29.03
GSMUA_Achr8P15820_001	Banana	nucleus	18.77	28.82
GSMUA_Achr5P26850_001	Banana	nucleus	20.69	28.27
GSMUA_Achr4P06170_001	Banana	nucleus	19.54	27.57
GSMUA_Achr3P23710_001	Banana	nucleus	21.07	27.23
Solyc11g045680.1.1	Tomato	nucleus, plastid	29.89	26.8
PGSC0003DMT400005585	Potato	nucleus, plastid	29.5	26.55
GSMUA_Achr1P18230_001	Banana	nucleus	19.16	26.32
GSMUA_Achr4P23620_001	Banana	nucleus	22.22	25.89
GSMUA_Achr9P11480_001	Banana	nucleus	22.22	25.66
GSMUA_Achr6P00250_001	Banana	nucleus	23.37	25.52
GSMUA_Achr4P06660_001	Banana	nucleus	18.77	25.52
Solyc11g045690.1.1	Tomato	nucleus, plastid	29.5	25.5
Bra023440.1-P	Field mustard	nucleus	31.8	24.63
CDX91091	Canola	nucleus	31.8	24.41
Bra008793.1-P	Field mustard	nucleus	29.89	24.3
CDY72607	Canola	nucleus	29.89	24.15
CDX85621	Canola	nucleus	31.42	23.98
GSMUA_Achr8P03550_001	Banana	nucleus	19.54	23.61
GSMUA_Achr3P19420_001	Banana	nucleus	25.67	23.59
GSMUA_Achr8P30180_001	Banana	nucleus	27.97	23.4
GSMUA_Achr4P33270_001	Banana	nucleus	22.99	22.56
GSMUA_AchrUn_...	Banana	nucleus	23.75	22.14
GSMUA_Achr5P09940_001	Banana	mitochondrion	19.92	21.85
GSMUA_Achr10P...	Banana	nucleus	18.01	21.17
GSMUA_Achr9P01870_001	Banana	nucleus	22.61	20.49

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr10G17370_001	EnsemblPlants:GSMUA_Achr10P17370_001	EnsemblPlants:GSMUA_Achr10T17370_001
InterPro:IPR001471	InterPro:IPR036955	UniProt:M0RJ12	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31677	PANTHER:PTHR31677:SF40	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000296A2AB	SEG:seg

Description

AP2 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G17370_001]

Coordinates

chr10:-:24617429..24618280

Molecular Weight (calculated)

27594.0 Da

IEP (calculated)

4.683

GRAVY (calculated)

-0.651

Length

261 amino acids

Sequence
(BLAST)

001: MGFSFFFSSS SSSASPGSDV TQEKKSKRRT QQDSSSSSES NGNGANSASA GGGGMRYLGV RRRPWGRYAA EIRDPATKER HWLGTFDTAE EAAVAYDRAA
101: RTLRGARART NFAYPDLPPG SSLTPFLSPD LQPPPSSFTL SAPSPIQDSG HHAAAAFPAL GGQGDYNAIA DSTISDDGTH YYYHNQQQQE DGGASAAGEE
201: DMAAMWCDPG EFGGYGSPAS HGIFFEEGYV HSPLFGPMPT VDDAAADGFQ LGGSSSSSYY Y

Best Arabidopsis Sequence Match ( AT5G13910.1 )
(BLAST)

001: MNTTSSKSKK KQDDQVGTRF LGVRRRPWGR YAAEIRDPTT KERHWLGTFD TAEEAALAYD RAARSMRGTR ARTNFVYSDM PPSSSVTSIV SPDDPPPPPP
101: PPAPPSNDPV DYMMMFNQYS STDSPMLQPH CDQVDSYMFG GSQSSNSYCY SNDSSNELPP LPSDLSNSCY SQPQWTWTGD DYSSEYVHSP MFSRMPPVSD
201: SFPQGFNYFG S

Arabidopsis Description

LEPLEP [Source:UniProtKB/TrEMBL;Acc:A0A178UQP2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.