Factsheet for Bra008793.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72607	Canola	nucleus	96.57	95.98
Bra023440.1-P	Field mustard	nucleus	87.23	83.09
AT5G13910.1	Thale cress	nucleus	51.4	78.2
Bra006222.1-P	Field mustard	nucleus	50.47	76.78
KRH06790	Soybean	nucleus	28.97	39.57
VIT_14s0068g00860.t01	Wine grape	nucleus	31.78	39.23
PGSC0003DMT400005596	Potato	nucleus, plastid	23.68	38.78
KRH70088	Soybean	nucleus	30.53	35.77
Bra010901.1-P	Field mustard	nucleus	24.92	34.19
Bra030076.1-P	Field mustard	nucleus	25.55	34.02
KRH08427	Soybean	nucleus	28.66	33.58
TraesCS2D01G286900.1	Wheat	plastid	25.23	30.92
Bra026949.1-P	Field mustard	nucleus	21.18	30.77
Bra027270.1-P	Field mustard	nucleus	15.26	30.62
TraesCS2B01G305500.1	Wheat	plastid	24.92	30.53
TraesCS2A01G288700.1	Wheat	plastid	24.92	30.53
HORVU2Hr1G071470.1	Barley	plastid	24.92	30.42
Bra010880.1-P	Field mustard	nucleus	16.2	30.23
Zm00001d025298_P001	Maize	plastid	25.55	30.15
PGSC0003DMT400005585	Potato	nucleus, plastid	27.1	30.0
GSMUA_Achr10P...	Banana	nucleus	24.3	29.89
Os04t0399800-00	Rice	nucleus	27.1	29.79
Bra030095.1-P	Field mustard	nucleus	15.58	29.76
Solyc11g045680.1.1	Tomato	nucleus, plastid	26.79	29.55
Os02t0520000-00	Rice	nucleus	21.81	29.29
Zm00001d003871_P001	Maize	plastid	24.61	29.15
Bra032900.1-P	Field mustard	nucleus	14.33	29.11
GSMUA_Achr3P02360_001	Banana	nucleus	23.99	28.62
Bra032901.1-P	Field mustard	nucleus	14.33	28.4
Solyc11g045690.1.1	Tomato	nucleus, plastid	26.48	28.15
EES10693	Sorghum	plastid	24.92	27.97
KXG30301	Sorghum	nucleus, plastid	23.68	27.54
Bra039658.1-P	Field mustard	nucleus	14.95	27.27
Zm00001d016623_P001	Maize	nucleus	22.43	27.17
Bra032898.1-P	Field mustard	nucleus	15.26	27.07
Bra030094.1-P	Field mustard	nucleus	14.95	26.97
Bra036016.1-P	Field mustard	nucleus	16.2	26.94
Bra001588.1-P	Field mustard	nucleus	17.45	26.54
Bra030957.1-P	Field mustard	nucleus	15.58	26.45
Bra038107.1-P	Field mustard	nucleus	16.2	26.0
Bra015266.1-P	Field mustard	nucleus	14.64	25.68
Bra010881.1-P	Field mustard	nucleus	14.64	25.54
Bra021594.1-P	Field mustard	nucleus	16.82	25.35
Bra003701.1-P	Field mustard	nucleus	14.95	24.62
Bra018864.1-P	Field mustard	nucleus	14.95	23.65
Bra006325.1-P	Field mustard	nucleus	14.33	23.47
Bra001784.1-P	Field mustard	nucleus	15.58	23.26
Bra035792.1-P	Field mustard	mitochondrion, nucleus	15.58	22.22
Bra006466.1-P	Field mustard	nucleus, plastid	20.87	21.61
Bra002168.1-P	Field mustard	nucleus, plastid	21.18	21.45
Bra038261.1-P	Field mustard	nucleus	14.95	21.43
Bra023684.1-P	Field mustard	nucleus, plastid	20.87	21.41
Bra012499.1-P	Field mustard	nucleus	19.31	21.02
Bra010972.1-P	Field mustard	nucleus	19.63	20.93
Bra026942.1-P	Field mustard	nucleus	17.13	18.71
Bra019801.1-P	Field mustard	nucleus	17.45	17.23
Bra032881.1-P	Field mustard	nucleus	7.48	16.67

Protein Annotations

Gene3D:1.10.110.10	MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:Bifun_inhib/LTP/seed_sf
InterPro:Bifunc_inhib/LTP/seed_store	EnsemblPlantsGene:Bra008793	EnsemblPlants:Bra008793.1	EnsemblPlants:Bra008793.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4CX46
PFAM:PF00847	PFAM:PF14368	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31677	PANTHER:PTHR31677:SF40
SMART:SM00380	SUPFAM:SSF47699	SUPFAM:SSF54171	UniParc:UPI000254538D	SEG:seg	:

Description

AT5G13900 (E=4e-049) | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein

Coordinates

chrA10:+:13858152..13859848

Molecular Weight (calculated)

35203.1 Da

IEP (calculated)

7.582

GRAVY (calculated)

-0.530

Length

321 amino acids

Sequence
(BLAST)

001: MNTTSSKSKK KQEEGGARFL GVRRRPWGRY AAEIRDPTTK ERHWLGTFDT AEEAALAYDR AARSMRGTRA RTNFVYSDMP PSSSVTSIIS PDDPPPPPPP
101: TSAAPPCSND PVDYMMMFNQ YSSTDSPMLQ PYSDQVDSSY MFGGSSSCYS NSSSELPPLP SDLSNSCYSQ PQWSVDDYST ATYFEVALLV VANFGMMHTR
201: GQSVSCLNQL APCLNYLNGT KEVPQVCCNP LKSVIKNNPE CLCRMISNRG SSRAEQAGIN VNDAQMLPAR CGEHVNPIAC LTNRSRGSTN SDRSSSTGNS
301: FSQSHWRTTL AFAATLLPFI L

Best Arabidopsis Sequence Match ( AT5G13910.1 )
(BLAST)

001: MNTTSSKSKK KQDDQVGTRF LGVRRRPWGR YAAEIRDPTT KERHWLGTFD TAEEAALAYD RAARSMRGTR ARTNFVYSDM PPSSSVTSIV SPDDPPPPPP
101: PPAPPSNDPV DYMMMFNQYS STDSPMLQPH CDQVDSYMFG GSQSSNSYCY SNDSSNELPP LPSDLSNSCY SQPQWTWTGD DYSSEYVHSP MFSRMPPVSD
201: SFPQGFNYFG S

Arabidopsis Description

LEPLEP [Source:UniProtKB/TrEMBL;Acc:A0A178UQP2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.