Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008793.1-P | Field mustard | nucleus | 95.98 | 96.57 |
| CDX91091 | Canola | nucleus | 89.16 | 84.71 |
| CDX85621 | Canola | nucleus | 87.62 | 82.75 |
| AT5G13910.1 | Thale cress | nucleus | 51.39 | 78.67 |
| CDX70526 | Canola | nucleus | 50.15 | 76.42 |
| CDX78545 | Canola | nucleus | 49.54 | 75.47 |
| KRH06790 | Soybean | nucleus | 29.1 | 40.0 |
| VIT_14s0068g00860.t01 | Wine grape | nucleus | 31.89 | 39.62 |
| PGSC0003DMT400005596 | Potato | nucleus, plastid | 23.53 | 38.78 |
| KRH70088 | Soybean | nucleus | 30.96 | 36.5 |
| CDY11748 | Canola | nucleus | 25.08 | 35.06 |
| CDY25733 | Canola | nucleus | 14.86 | 34.78 |
| CDY15690 | Canola | nucleus | 25.7 | 34.73 |
| CDX90126 | Canola | nucleus | 25.08 | 34.62 |
| CDX94591 | Canola | nucleus | 25.39 | 34.02 |
| KRH08427 | Soybean | nucleus | 28.79 | 33.94 |
| TraesCS2B01G305500.1 | Wheat | plastid | 25.08 | 30.92 |
| HORVU2Hr1G071470.1 | Barley | plastid | 25.08 | 30.8 |
| TraesCS2A01G288700.1 | Wheat | plastid | 24.77 | 30.53 |
| TraesCS2D01G286900.1 | Wheat | plastid | 24.77 | 30.53 |
| CDY70175 | Canola | nucleus | 15.79 | 30.36 |
| CDX90146 | Canola | nucleus | 16.1 | 30.23 |
| CDY69368 | Canola | nucleus | 16.1 | 30.23 |
| Zm00001d025298_P001 | Maize | plastid | 25.39 | 30.15 |
| PGSC0003DMT400005585 | Potato | nucleus, plastid | 26.93 | 30.0 |
| CDY02523 | Canola | nucleus | 15.79 | 30.0 |
| GSMUA_Achr10P... | Banana | nucleus | 24.15 | 29.89 |
| Os04t0399800-00 | Rice | nucleus | 26.93 | 29.79 |
| CDY15673 | Canola | nucleus | 15.48 | 29.76 |
| Solyc11g045680.1.1 | Tomato | nucleus, plastid | 26.63 | 29.55 |
| Zm00001d003871_P001 | Maize | plastid | 24.77 | 29.52 |
| Os02t0520000-00 | Rice | nucleus | 21.67 | 29.29 |
| GSMUA_Achr3P02360_001 | Banana | nucleus | 23.84 | 28.62 |
| CDX97640 | Canola | nucleus | 16.72 | 28.57 |
| CDY70796 | Canola | nucleus | 14.24 | 28.57 |
| CDY34104 | Canola | nucleus | 14.24 | 28.4 |
| EES10693 | Sorghum | plastid | 25.08 | 28.32 |
| Solyc11g045690.1.1 | Tomato | nucleus, plastid | 26.32 | 28.15 |
| CDX98534 | Canola | nucleus | 17.03 | 28.06 |
| CDY34105 | Canola | nucleus | 13.62 | 27.85 |
| CDX94610 | Canola | nucleus | 14.24 | 27.71 |
| KXG30301 | Sorghum | nucleus, plastid | 23.53 | 27.54 |
| CDY30806 | Canola | nucleus | 15.48 | 27.32 |
| CDY24111 | Canola | nucleus | 14.86 | 27.27 |
| Zm00001d016623_P001 | Maize | nucleus | 22.29 | 27.17 |
| CDY34107 | Canola | nucleus | 15.17 | 27.07 |
| CDY15674 | Canola | nucleus | 14.86 | 26.97 |
| CDY14914 | Canola | nucleus | 16.1 | 26.94 |
| CDX96955 | Canola | nucleus | 16.1 | 26.94 |
| CDX75817 | Canola | nucleus | 16.72 | 26.47 |
| CDX82442 | Canola | nucleus | 16.72 | 26.47 |
| CDY61213 | Canola | nucleus | 14.55 | 26.4 |
| CDX89866 | Canola | nucleus | 14.55 | 26.11 |
| CDY25874 | Canola | nucleus | 16.1 | 26.0 |
| CDY35734 | Canola | nucleus | 14.86 | 25.95 |
| CDY45936 | Canola | nucleus | 16.1 | 25.87 |
| CDY20105 | Canola | nucleus | 16.72 | 25.84 |
| CDY18185 | Canola | nucleus | 14.24 | 25.56 |
| CDX90145 | Canola | nucleus | 14.55 | 25.54 |
| CDY32314 | Canola | nucleus | 16.72 | 24.77 |
| CDY26598 | Canola | nucleus | 14.55 | 23.74 |
| CDY22810 | Canola | nucleus | 14.86 | 23.65 |
| CDX82253 | Canola | nucleus | 15.48 | 23.26 |
| CDY16037 | Canola | nucleus | 14.24 | 23.23 |
| CDY37113 | Canola | mitochondrion, nucleus | 14.86 | 23.08 |
| CDY36045 | Canola | nucleus | 15.48 | 23.04 |
| CDY68296 | Canola | nucleus | 21.67 | 21.67 |
| CDY36131 | Canola | nucleus | 19.81 | 21.4 |
| CDY51586 | Canola | nucleus | 19.5 | 21.36 |
| CDY58106 | Canola | nucleus | 21.67 | 21.08 |
| CDY02618 | Canola | nucleus | 21.67 | 21.08 |
| CDY24422 | Canola | nucleus | 19.5 | 21.07 |
| CDY03876 | Canola | nucleus | 19.5 | 21.07 |
| CDX88931 | Canola | nucleus | 21.36 | 20.97 |
| CDY13901 | Canola | nucleus | 21.67 | 20.83 |
| CDX70826 | Canola | nucleus | 20.74 | 20.24 |
| CDY61906 | Canola | cytosol | 8.36 | 20.0 |
| CDY16048 | Canola | nucleus | 17.34 | 19.18 |
| CDY26605 | Canola | nucleus | 17.03 | 18.71 |
| CDY19407 | Canola | nucleus | 17.96 | 18.35 |
| CDY46294 | Canola | nucleus | 7.43 | 16.67 |
| CDX98022 | Canola | nucleus | 2.17 | 3.54 |
Protein Annotations
| Gene3D:1.10.110.10 | MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078K3X4 | UniProt:A0A078K3X4 | InterPro:AP2/ERF_dom |
| InterPro:AP2/ERF_dom_sf | InterPro:Bifun_inhib/LTP/seed_sf | InterPro:Bifunc_inhib/LTP/seed_store | EnsemblPlants:CDY72607 | ProteinID:CDY72607 | ProteinID:CDY72607.1 |
| InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00033925001 |
| InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 | PFAM:PF14368 | PRINTS:PR00367 | PFscan:PS51032 |
| PANTHER:PTHR31677 | PANTHER:PTHR31677:SF40 | SMART:SM00380 | SUPFAM:SSF47699 | SUPFAM:SSF54171 | UniParc:UPI0004EF39C3 |
| SEG:seg | : | : | : | : | : |
Description
BnaCnng78540DBnaCnng78540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K3X4]
Coordinates
chrLK052208:-:182..1911
Molecular Weight (calculated)
35440.4 Da
IEP (calculated)
6.482
GRAVY (calculated)
-0.505
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTTSSKSKK KQEEGGARFL GVRRRPWGRY AAEIRDPTTK ERHWLGTFDT AEEAALAYDR AARSMRGTRA RTNFVYSDMP PSSSVTSIIS PDDPPPPPPP
101: AADAPPCSND PVDYMMMFNQ YSSTDSPMLQ PYSDQVDSSY MFGGSSSCYS NSSSELPPLP SDLSNSCYSQ PQWSVDDYST ATYFEVALLV VANFGMMQTR
201: GQSVSCLNQL APCLNYLNGT KEVPQVCCNP LKSVIKNNPE CLCRMISNRG SSRAEQAGID VNNAQMLPAR CGEHVNPIAC LTRSRGSTNS DRSSSTGNSF
301: SQSYWMTTLA FSATLLSFIL QIN
101: AADAPPCSND PVDYMMMFNQ YSSTDSPMLQ PYSDQVDSSY MFGGSSSCYS NSSSELPPLP SDLSNSCYSQ PQWSVDDYST ATYFEVALLV VANFGMMQTR
201: GQSVSCLNQL APCLNYLNGT KEVPQVCCNP LKSVIKNNPE CLCRMISNRG SSRAEQAGID VNNAQMLPAR CGEHVNPIAC LTRSRGSTNS DRSSSTGNSF
301: SQSYWMTTLA FSATLLSFIL QIN
001: MNTTSSKSKK KQDDQVGTRF LGVRRRPWGR YAAEIRDPTT KERHWLGTFD TAEEAALAYD RAARSMRGTR ARTNFVYSDM PPSSSVTSIV SPDDPPPPPP
101: PPAPPSNDPV DYMMMFNQYS STDSPMLQPH CDQVDSYMFG GSQSSNSYCY SNDSSNELPP LPSDLSNSCY SQPQWTWTGD DYSSEYVHSP MFSRMPPVSD
201: SFPQGFNYFG S
101: PPAPPSNDPV DYMMMFNQYS STDSPMLQPH CDQVDSYMFG GSQSSNSYCY SNDSSNELPP LPSDLSNSCY SQPQWTWTGD DYSSEYVHSP MFSRMPPVSD
201: SFPQGFNYFG S
Arabidopsis Description
LEPLEP [Source:UniProtKB/TrEMBL;Acc:A0A178UQP2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.