Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25874 | Canola | nucleus | 96.02 | 96.5 |
| CDY25733 | Canola | nucleus | 39.3 | 57.25 |
| CDY02523 | Canola | nucleus | 45.77 | 54.12 |
| CDY24111 | Canola | nucleus | 43.78 | 50.0 |
| CDY61213 | Canola | nucleus | 44.28 | 50.0 |
| AT1G53170.1 | Thale cress | nucleus | 44.78 | 48.65 |
| CDX97640 | Canola | nucleus | 44.78 | 47.62 |
| KRH55195 | Soybean | nucleus | 43.28 | 47.54 |
| CDY15673 | Canola | nucleus | 38.31 | 45.83 |
| CDY70175 | Canola | nucleus | 38.31 | 45.83 |
| CDY70796 | Canola | nucleus | 36.32 | 45.34 |
| CDX98534 | Canola | nucleus | 43.78 | 44.9 |
| CDX90146 | Canola | nucleus | 37.81 | 44.19 |
| CDX82442 | Canola | nucleus | 44.78 | 44.12 |
| CDY20105 | Canola | nucleus | 45.77 | 44.02 |
| CDY34104 | Canola | nucleus | 35.32 | 43.83 |
| CDX75817 | Canola | nucleus | 44.28 | 43.63 |
| CDY69368 | Canola | nucleus | 37.31 | 43.6 |
| KRH22040 | Soybean | nucleus | 41.29 | 43.01 |
| KRH27281 | Soybean | nucleus | 41.29 | 43.01 |
| CDY34105 | Canola | nucleus | 32.84 | 41.77 |
| CDY32314 | Canola | nucleus | 45.27 | 41.74 |
| CDY61906 | Canola | cytosol | 25.37 | 37.78 |
| CDY34107 | Canola | nucleus | 33.83 | 37.57 |
| CDY18185 | Canola | nucleus | 33.33 | 37.22 |
| CDY30806 | Canola | nucleus | 33.83 | 37.16 |
| CDY22810 | Canola | nucleus | 37.31 | 36.95 |
| CDY35734 | Canola | nucleus | 33.83 | 36.76 |
| CDX89866 | Canola | nucleus | 32.84 | 36.67 |
| CDY15674 | Canola | nucleus | 32.34 | 36.52 |
| CDX90145 | Canola | nucleus | 33.33 | 36.41 |
| CDY37113 | Canola | mitochondrion, nucleus | 37.31 | 36.06 |
| CDX94610 | Canola | nucleus | 29.35 | 35.54 |
| CDY36045 | Canola | nucleus | 38.31 | 35.48 |
| CDX82253 | Canola | nucleus | 37.81 | 35.35 |
| CDY14914 | Canola | nucleus | 32.84 | 34.2 |
| CDX96955 | Canola | nucleus | 32.84 | 34.2 |
| CDX70526 | Canola | nucleus | 25.37 | 24.06 |
| CDX78545 | Canola | nucleus | 25.37 | 24.06 |
| CDX90126 | Canola | nucleus | 24.38 | 20.94 |
| CDY11748 | Canola | nucleus | 23.88 | 20.78 |
| CDX94591 | Canola | nucleus | 24.38 | 20.33 |
| CDY15690 | Canola | nucleus | 23.88 | 20.08 |
| CDY26598 | Canola | nucleus | 16.92 | 17.17 |
| CDY16037 | Canola | nucleus | 16.92 | 17.17 |
| CDY36131 | Canola | nucleus | 25.37 | 17.06 |
| CDY03876 | Canola | nucleus | 24.88 | 16.72 |
| CDY24422 | Canola | nucleus | 24.38 | 16.39 |
| CDY26605 | Canola | nucleus | 23.88 | 16.33 |
| CDY51586 | Canola | nucleus | 23.88 | 16.27 |
| CDY19407 | Canola | nucleus | 25.37 | 16.14 |
| CDY72607 | Canola | nucleus | 25.87 | 16.1 |
| CDY68296 | Canola | nucleus | 25.87 | 16.1 |
| CDY16048 | Canola | nucleus | 23.38 | 16.1 |
| CDY02618 | Canola | nucleus | 26.37 | 15.96 |
| CDX91091 | Canola | nucleus | 26.87 | 15.88 |
| CDX85621 | Canola | nucleus | 26.87 | 15.79 |
| CDY13901 | Canola | nucleus | 25.87 | 15.48 |
| CDY58106 | Canola | nucleus | 25.37 | 15.36 |
| CDX88931 | Canola | nucleus | 24.38 | 14.89 |
| CDX70826 | Canola | nucleus | 24.38 | 14.8 |
| CDY46294 | Canola | nucleus | 3.98 | 5.56 |
| CDX98022 | Canola | nucleus | 4.98 | 5.05 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078I7T8 | UniProt:A0A078I7T8 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDY45936 | ProteinID:CDY45936 | ProteinID:CDY45936.1 | ncoils:Coil | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00082930001 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EED656 | SEG:seg | : | : | : | : |
Description
BnaC06g10050DBnaC06g10050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I7T8]
Coordinates
chrLK032642:+:183555..184160
Molecular Weight (calculated)
21826.9 Da
IEP (calculated)
9.491
GRAVY (calculated)
-0.485
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MTKSGSKPNP NPVENNAEEI HYRGVRKRPW GRYAAEIRDP FKRIRVWLGT FDTAQQAARA YDAAARELRG ANAKTNFPTL LELQLKGSGY TRAPRKSRTV
101: HSVSLLAARL AAPPQLRLSL GGSSGGGACY PQVPVARPLV ARPLAARPPV ARPVYCCNVT ACATCGAESE SDSSSVLEFE DETEEKPQLL NLDLNFPPPA
201: E
101: HSVSLLAARL AAPPQLRLSL GGSSGGGACY PQVPVARPLV ARPLAARPPV ARPVYCCNVT ACATCGAESE SDSSSVLEFE DETEEKPQLL NLDLNFPPPA
201: E
001: MAKMGLKPDP ATTNQTHNNA KEIRYRGVRK RPWGRYAAEI RDPGKKTRVW LGTFDTAEEA ARAYDTAARD FRGAKAKTNF PTFLELSDQK VPTGFARSPS
101: QSSTLDCASP PTLVVPSATA GNVPPQLELS LGGGGGGSCY QIPMSRPVYF LDLMGIGNVG RGQPPPVTSA FRSPVVHVAT KMACGAQSDS DSSSVVDFEG
201: GMEKRSQLLD LDLNLPPPSE QA
101: QSSTLDCASP PTLVVPSATA GNVPPQLELS LGGGGGGSCY QIPMSRPVYF LDLMGIGNVG RGQPPPVTSA FRSPVVHVAT KMACGAQSDS DSSSVVDFEG
201: GMEKRSQLLD LDLNLPPPSE QA
Arabidopsis Description
ERF4Ethylene-responsive transcription factor 4 [Source:UniProtKB/Swiss-Prot;Acc:O80340]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.