CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74753
CDY18913
CDY21119
CDY30008
CDY53883
CDY60684

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50640.1	CDX74753	AT2G45640.1	16429262
AT1G50640.1	CDY18913	AT2G45640.1	16429262
AT1G50640.1	CDY53883	AT2G45640.1	16429262
AT1G50640.1	CDY60684	AT2G45640.1	16429262
AT1G50640.1	CDY21119	AT4G38130.1	16429262
AT1G50640.1	CDY30008	AT4G38130.1	16429262

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22810	Canola	nucleus	91.35	93.6
AT1G50640.1	Thale cress	mitochondrion, nucleus	79.33	73.33
CDY36045	Canola	nucleus	74.52	71.43
CDX82253	Canola	nucleus	73.56	71.16
GSMUA_Achr3P13010_001	Banana	nucleus	47.12	64.05
GSMUA_Achr4P04060_001	Banana	mitochondrion	46.63	61.39
GSMUA_Achr4P06170_001	Banana	nucleus	50.48	56.76
KRH73332	Soybean	nucleus	57.21	55.35
Solyc10g006130.1.1	Tomato	mitochondrion, nucleus	58.65	55.2
KRH14810	Soybean	nucleus	55.77	54.98
PGSC0003DMT400037359	Potato	mitochondrion, nucleus	58.65	54.71
GSMUA_Achr1P18230_001	Banana	nucleus	49.04	53.68
VIT_12s0059g01460.t01	Wine grape	nucleus	51.92	52.94
Solyc07g064890.1.1	Tomato	nucleus	61.06	52.92
PGSC0003DMT400057443	Potato	nucleus	60.58	52.5
GSMUA_Achr4P11430_001	Banana	nucleus	37.02	46.95
CDY70796	Canola	nucleus	36.06	46.58
CDY25733	Canola	nucleus	30.29	45.65
CDY34105	Canola	nucleus	34.62	45.57
CDY70175	Canola	nucleus	36.06	44.64
CDY15673	Canola	nucleus	36.06	44.64
CDY34104	Canola	nucleus	34.62	44.44
CDX90146	Canola	nucleus	36.54	44.19
CDY02523	Canola	nucleus	35.58	43.53
CDY69368	Canola	nucleus	35.58	43.02
CDX97640	Canola	nucleus	37.02	40.74
CDY61906	Canola	cytosol	25.96	40.0
CDX98534	Canola	nucleus	36.54	38.78
CDY15674	Canola	nucleus	33.17	38.76
CDY34107	Canola	nucleus	33.17	38.12
CDY24111	Canola	nucleus	31.73	37.5
CDX94610	Canola	nucleus	29.81	37.35
CDY45936	Canola	nucleus	36.06	37.31
CDX82442	Canola	nucleus	36.54	37.25
CDX75817	Canola	nucleus	36.54	37.25
CDY30806	Canola	nucleus	32.69	37.16
CDY25874	Canola	nucleus	35.58	37.0
CDX89866	Canola	nucleus	31.73	36.67
CDY61213	Canola	nucleus	31.25	36.52
CDX90145	Canola	nucleus	32.21	36.41
CDY35734	Canola	nucleus	32.21	36.22
CDY18185	Canola	nucleus	31.25	36.11
CDY20105	Canola	nucleus	35.58	35.41
CDY14914	Canola	nucleus	31.73	34.2
CDX96955	Canola	nucleus	31.25	33.68
CDY32314	Canola	nucleus	35.1	33.49
CDX70526	Canola	nucleus	23.56	23.11
CDX78545	Canola	nucleus	23.08	22.64
CDY11748	Canola	nucleus	23.08	20.78
CDX94591	Canola	nucleus	24.04	20.75
CDX90126	Canola	nucleus	23.08	20.51
CDY15690	Canola	nucleus	23.56	20.5
CDY16048	Canola	nucleus	25.48	18.15
CDY26605	Canola	nucleus	25.48	18.03
CDY03876	Canola	nucleus	25.48	17.73
CDY51586	Canola	nucleus	25.0	17.63
CDY02618	Canola	nucleus	27.88	17.47
CDY36131	Canola	nucleus	25.0	17.39
CDY24422	Canola	nucleus	25.0	17.39
CDY68296	Canola	nucleus	26.92	17.34
CDX88931	Canola	nucleus	27.4	17.33
CDY13901	Canola	nucleus	27.88	17.26
CDX70826	Canola	nucleus	27.4	17.22
CDY58106	Canola	nucleus	27.4	17.17
CDY19407	Canola	nucleus	25.0	16.46
CDY72607	Canola	nucleus	23.08	14.86
CDX91091	Canola	nucleus	24.04	14.71
CDY16037	Canola	nucleus	13.94	14.65
CDY26598	Canola	nucleus	13.94	14.65
CDX85621	Canola	nucleus	24.04	14.62
CDX98022	Canola	nucleus	5.77	6.06
CDY46294	Canola	nucleus	3.85	5.56

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	GO:A0A078HJT8	UniProt:A0A078HJT8	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
EnsemblPlants:CDY37113	ProteinID:CDY37113	ProteinID:CDY37113.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00063338001	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31677	PANTHER:PTHR31677:SF13	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0004EBAA8D	SEG:seg	:	:	:	:

Description

BnaC06g03860DBnaC06g03860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJT8]

Coordinates

chrLK032392:+:67849..68778

Molecular Weight (calculated)

22717.6 Da

IEP (calculated)

10.011

GRAVY (calculated)

-0.666

Length

208 amino acids

Sequence
(BLAST)

001: MRRGRVSIPV AGPTVTANHN ASIKETRFRG VRKRPWGRYA AEIRDPWKKA RVWLGTFDSA VDAARAYDAA ARNLRGPKAK TNFPIESSPS PPQIDPFMDH
101: RLYAGVSSRP TSSGMSSTVE SSSGQRSSVA KPMSTTAKRY PRTPPVVPED CHSDCGSSSS VVDDGDDDIA SSSRRRNPPP FKFDLNFPPL DDVGLINGVD
201: DLCTDLRL

Best Arabidopsis Sequence Match ( AT1G50640.1 )
(BLAST)

001: MRRGRGSSAV AGPTVVAAIN GSVKEIRFRG VRKRPWGRFA AEIRDPWKKA RVWLGTFDSA EEAARAYDSA ARNLRGPKAK TNFPIDSSSP PPPNLRFNQI
101: RNQNQNQVDP FMDHRLFTDH QQQFPIVNRP TSSSMSSTVE SFSGPRPTTM KPATTKRYPR TPPVVPEDCH SDCDSSSSVI DDDDDIASSS RRRNPPFQFD
201: LNFPPLDCVD LFNGADDLHC TDLRL

Arabidopsis Description

ERF3Uncharacterized protein At1g50640 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV01]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.