CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75817
CDX82442
CDX97640
CDX98534
CDY04768
CDY20105
CDY21119
CDY21400
CDY22810
CDY25761
CDY30008
CDY32314
CDY37113

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45640.1	CDY04768	AT1G22920.1	21798944
AT2G45640.1	CDY21400	AT1G22920.1	21798944
AT2G45640.1	CDY25761	AT1G22920.1	21798944
AT2G45640.1	CDY22810	AT1G50640.1	16429262
AT2G45640.1	CDY37113	AT1G50640.1	16429262
AT2G45640.1	CDX75817	AT3G15210.1	16429262
AT2G45640.1	CDX82442	AT3G15210.1	16429262
AT2G45640.1	CDX97640	AT3G15210.1	16429262
AT2G45640.1	CDX98534	AT3G15210.1	16429262
AT2G45640.1	CDY20105	AT3G15210.1	16429262
AT2G45640.1	CDY32314	AT3G15210.1	16429262
AT2G45640.1	CDY21119	AT4G38130.1	16429262
AT2G45640.1	CDY30008	AT4G38130.1	16429262

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004926.1-P	Field mustard	mitochondrion	97.39	98.03
CDY18913	Canola	mitochondrion	96.73	97.37
CDY60684	Canola	mitochondrion	46.41	88.75
AT2G45640.1	Thale cress	cytosol	85.62	86.18
CDY53883	Canola	cytosol	33.33	83.61
KRH48306	Soybean	cytosol	34.64	73.61
KRH65197	Soybean	nucleus	72.55	73.51
VIT_15s0048g01290.t01	Wine grape	nucleus	72.55	73.03
PGSC0003DMT400035608	Potato	cytosol	73.2	71.79
Solyc05g047690.2.1	Tomato	nucleus	73.2	71.79
GSMUA_Achr3P12560_001	Banana	cytosol	68.63	69.08
Os02t0122000-01	Rice	nucleus, plastid	68.63	69.08
TraesCS6A01G067100.1	Wheat	nucleus	64.71	66.0
TraesCSU01G117100.1	Wheat	cytosol	64.71	66.0
EES06194	Sorghum	cytosol, mitochondrion, nucleus, plastid	65.36	65.79
Zm00001d015058_P002	Maize	cytosol, mitochondrion, nucleus, plastid	65.36	65.79
TraesCS6B01G090300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	64.71	65.13
HORVU6Hr1G012050.4	Barley	plastid	64.71	49.5
Zm00001d053919_P001	Maize	plastid	60.78	44.08

Protein Annotations

EnsemblPlants:CDX74753	EnsemblPlantsGene:GSBRNA2T00116721001	Gene3D:3.10.20.550	InterPro:Hist_deAcase_cplx_SAP18	InterPro:SAP18	PANTHER:PTHR13082
PFAM:PF06487	PIRSF:PIRSF037637	ProteinID:CDX74753	ProteinID:CDX74753.1	SEG:seg	UniParc:UPI0004EDC698
MapMan:12.3.2.4.3	:	:	:	:	:

Description

BnaA05g04990D

Coordinates

chrLK031802:-:462632..464113

Molecular Weight (calculated)

17486.8 Da

IEP (calculated)

9.979

GRAVY (calculated)

-0.882

Length

153 amino acids

Sequence
(BLAST)

001: MAETARRQGG GRPLPPPPPR GVNQQPPRPK TEPVDREKTC PLLLRVFTKT GGHHTKEDYA VRGKEPKDEV QIYTWKDANL RELTDLVKEV SVAARRRDAR
101: LSFAFVYPDK NGRFIVRQVG QTMSYPNRKQ PDDSKTLADL HFEIGDYLDV AIY

Best Arabidopsis Sequence Match ( AT2G45640.1 )
(BLAST)

001: MAEAARRQGG GRPLPPPPRG VNQQPPRPKP EPVDREKTCP LLLRVFTKSG GHHTSEDYAV RGKEPKDEVQ IYTWKDASLR ELTDLVKEVS VAARRRNARL
101: SFAFVYPNNK GGYNVREVGE TMAYPNRKQP DDSKTLSELP FEIGDYLDVA IY

Arabidopsis Description

SAP18SAP18 [Source:UniProtKB/TrEMBL;Acc:A0A178VW39]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.