Factsheet for Bra004926.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001588.1-P
Bra003701.1-P
Bra012351.1-P
Bra018864.1-P
Bra021594.1-P
Bra024548.1-P
Bra027270.1-P
Bra040131.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45640.1	Bra012351.1-P	AT1G22920.1	21798944
AT2G45640.1	Bra024548.1-P	AT1G22920.1	21798944
AT2G45640.1	Bra018864.1-P	AT1G50640.1	16429262
AT2G45640.1	Bra001588.1-P	AT3G15210.1	16429262
AT2G45640.1	Bra003701.1-P	AT3G15210.1	16429262
AT2G45640.1	Bra021594.1-P	AT3G15210.1	16429262
AT2G45640.1	Bra027270.1-P	AT3G15210.1	16429262
AT2G45640.1	Bra040131.1-P	AT4G38130.1	16429262

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18913	Canola	mitochondrion	99.34	99.34
CDX74753	Canola	mitochondrion	98.03	97.39
CDY60684	Canola	mitochondrion	46.71	88.75
AT2G45640.1	Thale cress	cytosol	88.16	88.16
CDY53883	Canola	cytosol	33.55	83.61
KRH65197	Soybean	nucleus	73.68	74.17
VIT_15s0048g01290.t01	Wine grape	nucleus	73.68	73.68
KRH48306	Soybean	cytosol	34.87	73.61
PGSC0003DMT400035608	Potato	cytosol	71.71	69.87
Solyc05g047690.2.1	Tomato	nucleus	71.71	69.87
GSMUA_Achr3P12560_001	Banana	cytosol	69.08	69.08
Os02t0122000-01	Rice	nucleus, plastid	68.42	68.42
TraesCS6A01G067100.1	Wheat	nucleus	65.13	66.0
TraesCSU01G117100.1	Wheat	cytosol	65.13	66.0
EES06194	Sorghum	cytosol, mitochondrion, nucleus, plastid	65.13	65.13
TraesCS6B01G090300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	65.13	65.13
Zm00001d015058_P002	Maize	cytosol, mitochondrion, nucleus, plastid	65.13	65.13
HORVU6Hr1G012050.4	Barley	plastid	65.13	49.5
Zm00001d053919_P001	Maize	plastid	60.53	43.6

Protein Annotations

MapMan:12.3.2.4.3	Gene3D:3.10.20.550	EnsemblPlantsGene:Bra004926	EnsemblPlants:Bra004926.1	EnsemblPlants:Bra004926.1-P	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628
GO:GO:0009651	GO:GO:0009719	GO:GO:0009737	GO:GO:0009987	InterPro:Hist_deAcase_cplx_SAP18	UniProt:M4CL40
PFAM:PF06487	PIRSF:PIRSF037637	PANTHER:PTHR13082	InterPro:SAP18	UniParc:UPI0002547FEE	SEG:seg

Description

AT2G45640 (E=4e-059) SAP18, ATSAP18 | SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18); protein binding / transcription regulator

Coordinates

chrA05:-:2521759..2522993

Molecular Weight (calculated)

17389.7 Da

IEP (calculated)

9.979

GRAVY (calculated)

-0.877

Length

152 amino acids

Sequence
(BLAST)

001: MAETARRQGG GRPLPPPPRG VNQQPPRPKT EPVDREKTCP LLLRVFTKTG GHHTKEDYAV RGKEPKDEVQ IYTWKDANLR ELTDLVKEVS VAARRRDARL
101: SFAFVYPDKN GRFIVRQVGQ TMSYPNRKQP DDSKTLADLH FEIGDYLDVA IY

Best Arabidopsis Sequence Match ( AT2G45640.1 )
(BLAST)

001: MAEAARRQGG GRPLPPPPRG VNQQPPRPKP EPVDREKTCP LLLRVFTKSG GHHTSEDYAV RGKEPKDEVQ IYTWKDASLR ELTDLVKEVS VAARRRNARL
101: SFAFVYPNNK GGYNVREVGE TMAYPNRKQP DDSKTLSELP FEIGDYLDVA IY

Arabidopsis Description

SAP18SAP18 [Source:UniProtKB/TrEMBL;Acc:A0A178VW39]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.