Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60684 | Canola | mitochondrion | 98.36 | 75.0 |
| Bra004926.1-P | Field mustard | mitochondrion | 83.61 | 33.55 |
| CDY18913 | Canola | mitochondrion | 83.61 | 33.55 |
| CDX74753 | Canola | mitochondrion | 83.61 | 33.33 |
| AT2G45640.1 | Thale cress | cytosol | 67.21 | 26.97 |
| KRH65197 | Soybean | nucleus | 59.02 | 23.84 |
| VIT_15s0048g01290.t01 | Wine grape | nucleus | 59.02 | 23.68 |
| PGSC0003DMT400035608 | Potato | cytosol | 59.02 | 23.08 |
| Solyc05g047690.2.1 | Tomato | nucleus | 59.02 | 23.08 |
| GSMUA_Achr3P12560_001 | Banana | cytosol | 57.38 | 23.03 |
| EES06194 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 55.74 | 22.37 |
| Os02t0122000-01 | Rice | nucleus, plastid | 55.74 | 22.37 |
| Zm00001d015058_P002 | Maize | cytosol, mitochondrion, nucleus, plastid | 55.74 | 22.37 |
| TraesCS6A01G067100.1 | Wheat | nucleus | 52.46 | 21.33 |
| TraesCSU01G117100.1 | Wheat | cytosol | 52.46 | 21.33 |
| TraesCS6B01G090300.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 52.46 | 21.05 |
| KRH48306 | Soybean | cytosol | 24.59 | 20.83 |
| Zm00001d053919_P001 | Maize | plastid | 55.74 | 16.11 |
| HORVU6Hr1G012050.4 | Barley | plastid | 52.46 | 16.0 |
Protein Annotations
| EnsemblPlants:CDY53883 | EnsemblPlantsGene:GSBRNA2T00011642001 | Gene3D:3.10.20.550 | InterPro:SAP18 | PFAM:PF06487 | ProteinID:CDY53883 |
| ProteinID:CDY53883.1 | UniParc:UPI0004EEAFA5 | UniProt:A0A078IXZ9 | MapMan:35.2 | : | : |
Description
BnaA03g56850DBnaA03g56850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IXZ9]
Coordinates
chrLK033247:-:16222..17034
Molecular Weight (calculated)
7025.5 Da
IEP (calculated)
9.605
GRAVY (calculated)
-0.377
Length
61 amino acids
Sequence
(BLAST)
(BLAST)
1: MKFKSTLGKM PIFVKEVSNG RFIVRQVGQT MSYPNRKQPD DSKTLADLHF EIGDYLDVAI Y
001: MAEAARRQGG GRPLPPPPRG VNQQPPRPKP EPVDREKTCP LLLRVFTKSG GHHTSEDYAV RGKEPKDEVQ IYTWKDASLR ELTDLVKEVS VAARRRNARL
101: SFAFVYPNNK GGYNVREVGE TMAYPNRKQP DDSKTLSELP FEIGDYLDVA IY
101: SFAFVYPNNK GGYNVREVGE TMAYPNRKQP DDSKTLSELP FEIGDYLDVA IY
Arabidopsis Description
SAP18SAP18 [Source:UniProtKB/TrEMBL;Acc:A0A178VW39]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.