Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH65197 | Soybean | nucleus | 83.55 | 84.11 |
| KRH48306 | Soybean | cytosol | 36.84 | 77.78 |
| Os02t0122000-01 | Rice | nucleus, plastid | 75.0 | 75.0 |
| GSMUA_Achr3P12560_001 | Banana | cytosol | 74.34 | 74.34 |
| Bra004926.1-P | Field mustard | mitochondrion | 73.68 | 73.68 |
| CDY18913 | Canola | mitochondrion | 73.68 | 73.68 |
| PGSC0003DMT400035608 | Potato | cytosol | 75.0 | 73.08 |
| Solyc05g047690.2.1 | Tomato | nucleus | 75.0 | 73.08 |
| CDX74753 | Canola | mitochondrion | 73.03 | 72.55 |
| TraesCS6A01G067100.1 | Wheat | nucleus | 69.74 | 70.67 |
| TraesCSU01G117100.1 | Wheat | cytosol | 69.74 | 70.67 |
| EES06194 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 70.39 | 70.39 |
| AT2G45640.1 | Thale cress | cytosol | 70.39 | 70.39 |
| Zm00001d015058_P002 | Maize | cytosol, mitochondrion, nucleus, plastid | 70.39 | 70.39 |
| TraesCS6B01G090300.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 68.42 | 68.42 |
| CDY60684 | Canola | mitochondrion | 34.21 | 65.0 |
| CDY53883 | Canola | cytosol | 23.68 | 59.02 |
| HORVU6Hr1G012050.4 | Barley | plastid | 69.74 | 53.0 |
| Zm00001d053919_P001 | Maize | plastid | 65.13 | 46.92 |
Protein Annotations
| ArrayExpress:VIT_15s0048g01290 | EMBL:FN596739 | EnsemblPlants:VIT_15s0048g01290.t01 | EnsemblPlantsGene:VIT_15s0048g01290 | EntrezGene:100250532 | EntrezGene:LOC100250532 |
| Gene3D:3.10.20.550 | InterPro:SAP18 | PANTHER:PTHR13082 | PFAM:PF06487 | ProteinID:CBI38821 | ProteinID:CBI38821.3 |
| RefSeq:XP_002277566 | RefSeq:XP_002277566.1 | RefSeq:XP_010661602.1 | SEG:seg | TIGR:TC54195 | UniParc:UPI0001984CD7 |
| UniProt:D7U7P2 | wikigene:100250532 | wikigene:LOC100250532 | MapMan:12.3.2.4.3 | : | : |
Description
No Description!
Coordinates
chr15:+:15433768..15442142
Molecular Weight (calculated)
16885.3 Da
IEP (calculated)
9.753
GRAVY (calculated)
-0.519
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGAGEGPKR AGRPLPPPGR GPPPPPRPRF EPVDREKTCP LLLRVFTKIG CHHSKEDFAV RGKEPKDEVQ IYTWKDATLR ELTDLVKEVA PAARRRDAIL
101: SFAFVYPDTN GRFVLREVGK TFSYGNGKRL DDGKALAELG FQIGDYLDVA IL
101: SFAFVYPDTN GRFVLREVGK TFSYGNGKRL DDGKALAELG FQIGDYLDVA IL
001: MAEAARRQGG GRPLPPPPRG VNQQPPRPKP EPVDREKTCP LLLRVFTKSG GHHTSEDYAV RGKEPKDEVQ IYTWKDASLR ELTDLVKEVS VAARRRNARL
101: SFAFVYPNNK GGYNVREVGE TMAYPNRKQP DDSKTLSELP FEIGDYLDVA IY
101: SFAFVYPNNK GGYNVREVGE TMAYPNRKQP DDSKTLSELP FEIGDYLDVA IY
Arabidopsis Description
SAP18SAP18 [Source:UniProtKB/TrEMBL;Acc:A0A178VW39]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.