Factsheet for VIT_12s0059g01460.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04240.t01
VIT_14s0006g01820.t01
VIT_15s0048g01290.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50640.1	VIT_15s0048g01290.t01	AT2G45640.1	16429262
AT1G50640.1	VIT_03s0038g04240.t01	AT4G38130.1	16429262
AT1G50640.1	VIT_14s0006g01820.t01	AT4G38130.1	16429262

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P13010_001	Banana	nucleus	48.04	64.05
GSMUA_Achr4P06170_001	Banana	nucleus	53.43	58.92
KRH14810	Soybean	nucleus	59.8	57.82
KRH73332	Soybean	nucleus	59.8	56.74
GSMUA_Achr4P04060_001	Banana	mitochondrion	43.63	56.33
GSMUA_Achr1P18230_001	Banana	nucleus	51.96	55.79
Solyc10g006130.1.1	Tomato	mitochondrion, nucleus	59.8	55.2
PGSC0003DMT400037359	Potato	mitochondrion, nucleus	59.31	54.26
Solyc07g064890.1.1	Tomato	nucleus	61.76	52.5
Bra018864.1-P	Field mustard	nucleus	51.96	52.22
CDY22810	Canola	nucleus	51.96	52.22
PGSC0003DMT400057443	Potato	nucleus	61.27	52.08
CDY37113	Canola	mitochondrion, nucleus	52.94	51.92
AT1G50640.1	Thale cress	mitochondrion, nucleus	55.88	50.67
VIT_19s0090g01080.t01	Wine grape	nucleus	58.82	46.51
GSMUA_Achr4P11430_001	Banana	nucleus	36.76	45.73
VIT_10s0003g00130.t01	Wine grape	nucleus	31.37	42.11
VIT_07s0141g00690.t01	Wine grape	nucleus	34.31	41.67
VIT_14s0081g00520.t01	Wine grape	nucleus	34.8	41.52
VIT_12s0028g03270.t01	Wine grape	nucleus	35.78	34.6
VIT_19s0014g02240.t01	Wine grape	nucleus	37.25	34.55
VIT_10s0003g00140.t01	Wine grape	nucleus	35.78	32.16
VIT_14s0068g00860.t01	Wine grape	nucleus	26.96	21.15
VIT_00s0291g00030.t01	Wine grape	nucleus	28.92	14.25

Protein Annotations

EntrezGene:100241392	wikigene:100241392	MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
ProteinID:CCB52001	ProteinID:CCB52001.1	InterPro:DNA-bd_dom_sf	UniProt:F6HIF5	EMBL:FN595765	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR001471	InterPro:IPR036955
EMBL:KX668862	EntrezGene:LOC100241392	wikigene:LOC100241392	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31677	PANTHER:PTHR31677:SF17	SMART:SM00380	SUPFAM:SSF54171	TIGR:TC58939	TIGR:TC60699
UniParc:UPI0001984715	ArrayExpress:VIT_12s0059g01460	EnsemblPlantsGene:VIT_12s0059g01460	EnsemblPlants:VIT_12s0059g01460.t01	unigene:Vvi.7125	RefSeq:XP_002275892
RefSeq:XP_002275892.1	SEG:seg	:	:	:	:

Description

Ethylene response factor 10-c [Source:UniProtKB/TrEMBL;Acc:F6HIF5]

Coordinates

chr12:+:6403314..6404449

Molecular Weight (calculated)

22579.1 Da

IEP (calculated)

8.338

GRAVY (calculated)

-0.945

Length

204 amino acids

Sequence
(BLAST)

001: MRRGRATARD APQQQEVRNQ GKDVRFRGVR KRPWGRFAAE IRDPWKKTRV WLGTFDSAED AARAYDAAAR SLRGPKAKTN FPLSSPAVPL TVPFQQPSQY
101: QIQDQNHSHQ HQPQRPTTSG MSSTVESFSG PRLSNPPSAP PRPRLRAPPV NDCQSDCDSS SSVIDECDGD LTSSSRKPLP FDLNLLPPSE DGDDDDLDAT
201: ALCL

Best Arabidopsis Sequence Match ( AT1G50640.1 )
(BLAST)

001: MRRGRGSSAV AGPTVVAAIN GSVKEIRFRG VRKRPWGRFA AEIRDPWKKA RVWLGTFDSA EEAARAYDSA ARNLRGPKAK TNFPIDSSSP PPPNLRFNQI
101: RNQNQNQVDP FMDHRLFTDH QQQFPIVNRP TSSSMSSTVE SFSGPRPTTM KPATTKRYPR TPPVVPEDCH SDCDSSSSVI DDDDDIASSS RRRNPPFQFD
201: LNFPPLDCVD LFNGADDLHC TDLRL

Arabidopsis Description

ERF3Uncharacterized protein At1g50640 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV01]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.