Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P13010_001 | Banana | nucleus | 65.26 | 81.05 |
| GSMUA_Achr4P04060_001 | Banana | mitochondrion | 51.58 | 62.03 |
| GSMUA_Achr4P06170_001 | Banana | nucleus | 60.0 | 61.62 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.05 | 54.63 |
| VIT_12s0059g01460.t01 | Wine grape | nucleus | 55.79 | 51.96 |
| GSMUA_Achr7P00350_001 | Banana | nucleus | 30.0 | 51.82 |
| Bra018864.1-P | Field mustard | nucleus | 53.68 | 50.25 |
| AT1G50640.1 | Thale cress | mitochondrion, nucleus | 59.47 | 50.22 |
| Solyc10g006130.1.1 | Tomato | mitochondrion, nucleus | 57.89 | 49.77 |
| KRH14810 | Soybean | nucleus | 55.26 | 49.76 |
| CDY22810 | Canola | nucleus | 53.16 | 49.75 |
| CDY37113 | Canola | mitochondrion, nucleus | 53.68 | 49.04 |
| KRH73332 | Soybean | nucleus | 55.26 | 48.84 |
| PGSC0003DMT400037359 | Potato | mitochondrion, nucleus | 56.84 | 48.43 |
| GSMUA_Achr4P11430_001 | Banana | nucleus | 40.53 | 46.95 |
| Solyc07g064890.1.1 | Tomato | nucleus | 58.42 | 46.25 |
| PGSC0003DMT400057443 | Potato | nucleus | 57.89 | 45.83 |
| GSMUA_Achr3P29290_001 | Banana | nucleus | 35.79 | 42.77 |
| GSMUA_Achr7P03640_001 | Banana | nucleus | 35.79 | 40.96 |
| GSMUA_Achr8P15820_001 | Banana | nucleus | 33.68 | 37.65 |
| GSMUA_Achr8P33590_001 | Banana | nucleus | 36.32 | 36.9 |
| GSMUA_Achr5P26850_001 | Banana | nucleus | 36.32 | 36.13 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.63 | 35.03 |
| GSMUA_Achr6P01440_001 | Banana | nucleus | 34.21 | 34.95 |
| GSMUA_Achr4P06660_001 | Banana | nucleus | 35.26 | 34.9 |
| GSMUA_Achr3P23710_001 | Banana | nucleus | 36.84 | 34.65 |
| GSMUA_Achr8P06870_001 | Banana | nucleus | 33.68 | 34.59 |
| GSMUA_Achr1P25890_001 | Banana | nucleus | 28.95 | 34.59 |
| GSMUA_Achr6P00240_001 | Banana | nucleus | 31.05 | 34.3 |
| GSMUA_Achr8P03550_001 | Banana | nucleus | 38.42 | 33.8 |
| GSMUA_Achr9P11480_001 | Banana | nucleus | 38.95 | 32.74 |
| GSMUA_Achr8P15830_001 | Banana | nucleus | 33.16 | 31.66 |
| GSMUA_Achr6P00250_001 | Banana | nucleus | 38.42 | 30.54 |
| GSMUA_Achr4P23620_001 | Banana | nucleus | 34.74 | 29.46 |
| GSMUA_Achr6P35320_001 | Banana | nucleus | 22.11 | 29.37 |
| GSMUA_Achr10P... | Banana | nucleus | 33.16 | 28.38 |
| GSMUA_Achr4P33270_001 | Banana | nucleus | 38.95 | 27.82 |
| GSMUA_Achr5P09940_001 | Banana | mitochondrion | 34.74 | 27.73 |
| GSMUA_Achr7P17910_001 | Banana | nucleus | 21.05 | 24.69 |
| GSMUA_Achr3P19420_001 | Banana | nucleus | 34.21 | 22.89 |
| GSMUA_Achr9P01870_001 | Banana | nucleus | 30.53 | 20.14 |
| GSMUA_Achr3P02360_001 | Banana | nucleus | 28.42 | 20.07 |
| GSMUA_AchrUn_... | Banana | nucleus | 28.42 | 19.29 |
| GSMUA_Achr10P... | Banana | nucleus | 26.32 | 19.16 |
| GSMUA_Achr8P30180_001 | Banana | nucleus | 27.37 | 16.67 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr1G18230_001 | EnsemblPlants:GSMUA_Achr1P18230_001 | EnsemblPlants:GSMUA_Achr1T18230_001 |
| InterPro:IPR001471 | InterPro:IPR036955 | UniProt:M0S0Y1 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 |
| PANTHER:PTHR31677 | PANTHER:PTHR31677:SF17 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0002950265 | SEG:seg |
Description
Putative AP2 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G18230_001]
Coordinates
chr1:-:13623813..13625040
Molecular Weight (calculated)
20559.2 Da
IEP (calculated)
8.119
GRAVY (calculated)
-0.546
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKGSAQAVD PLAAAQIGGA IAVEKRFRGV RKRPWGRFAA EIRDPWKKTR VWLGTFDSAE DAARAYDAAA IALRGPKAKT NFPSPPSPFP PAALPAAAAH
101: FSFHHRQQHY PQPPPPPQRP TSSSHSSTAN PPPPPRVLNG DDDCHSDCGS SSSVIDDDGD VVLMCRPPLP FDLNLLPLPD DDLHDTVLRL
101: FSFHHRQQHY PQPPPPPQRP TSSSHSSTAN PPPPPRVLNG DDDCHSDCGS SSSVIDDDGD VVLMCRPPLP FDLNLLPLPD DDLHDTVLRL
001: MRRGRGSSAV AGPTVVAAIN GSVKEIRFRG VRKRPWGRFA AEIRDPWKKA RVWLGTFDSA EEAARAYDSA ARNLRGPKAK TNFPIDSSSP PPPNLRFNQI
101: RNQNQNQVDP FMDHRLFTDH QQQFPIVNRP TSSSMSSTVE SFSGPRPTTM KPATTKRYPR TPPVVPEDCH SDCDSSSSVI DDDDDIASSS RRRNPPFQFD
201: LNFPPLDCVD LFNGADDLHC TDLRL
101: RNQNQNQVDP FMDHRLFTDH QQQFPIVNRP TSSSMSSTVE SFSGPRPTTM KPATTKRYPR TPPVVPEDCH SDCDSSSSVI DDDDDIASSS RRRNPPFQFD
201: LNFPPLDCVD LFNGADDLHC TDLRL
Arabidopsis Description
ERF3Uncharacterized protein At1g50640 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV01]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.