Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P18230_001 | Banana | nucleus | 81.05 | 65.26 |
| GSMUA_Achr4P06170_001 | Banana | nucleus | 71.24 | 58.92 |
| GSMUA_Achr4P04060_001 | Banana | mitochondrion | 55.56 | 53.8 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.6 | 51.85 |
| GSMUA_Achr7P00350_001 | Banana | nucleus | 36.6 | 50.91 |
| VIT_12s0059g01460.t01 | Wine grape | nucleus | 64.05 | 48.04 |
| Bra018864.1-P | Field mustard | nucleus | 63.4 | 47.78 |
| CDY22810 | Canola | nucleus | 63.4 | 47.78 |
| KRH14810 | Soybean | nucleus | 65.36 | 47.39 |
| CDY37113 | Canola | mitochondrion, nucleus | 64.05 | 47.12 |
| KRH73332 | Soybean | nucleus | 66.01 | 46.98 |
| Solyc10g006130.1.1 | Tomato | mitochondrion, nucleus | 67.32 | 46.61 |
| PGSC0003DMT400037359 | Potato | mitochondrion, nucleus | 66.01 | 45.29 |
| AT1G50640.1 | Thale cress | mitochondrion, nucleus | 65.36 | 44.44 |
| Solyc07g064890.1.1 | Tomato | nucleus | 69.28 | 44.17 |
| PGSC0003DMT400057443 | Potato | nucleus | 68.63 | 43.75 |
| GSMUA_Achr4P11430_001 | Banana | nucleus | 46.41 | 43.29 |
| GSMUA_Achr7P03640_001 | Banana | nucleus | 45.75 | 42.17 |
| GSMUA_Achr8P33590_001 | Banana | nucleus | 46.41 | 37.97 |
| GSMUA_Achr3P29290_001 | Banana | nucleus | 39.22 | 37.74 |
| GSMUA_Achr8P15820_001 | Banana | nucleus | 40.52 | 36.47 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.83 | 36.16 |
| GSMUA_Achr1P25890_001 | Banana | nucleus | 36.6 | 35.22 |
| GSMUA_Achr5P26850_001 | Banana | nucleus | 43.79 | 35.08 |
| GSMUA_Achr3P23710_001 | Banana | nucleus | 45.75 | 34.65 |
| GSMUA_Achr8P06870_001 | Banana | nucleus | 41.83 | 34.59 |
| GSMUA_Achr6P01440_001 | Banana | nucleus | 41.83 | 34.41 |
| GSMUA_Achr4P06660_001 | Banana | nucleus | 43.14 | 34.38 |
| GSMUA_Achr6P00240_001 | Banana | nucleus | 37.25 | 33.14 |
| GSMUA_Achr8P15830_001 | Banana | nucleus | 42.48 | 32.66 |
| GSMUA_Achr8P03550_001 | Banana | nucleus | 45.75 | 32.41 |
| GSMUA_Achr9P11480_001 | Banana | nucleus | 47.06 | 31.86 |
| GSMUA_Achr4P23620_001 | Banana | nucleus | 44.44 | 30.36 |
| GSMUA_Achr6P00250_001 | Banana | nucleus | 47.06 | 30.13 |
| GSMUA_Achr10P... | Banana | nucleus | 42.48 | 29.28 |
| GSMUA_Achr6P35320_001 | Banana | nucleus | 26.8 | 28.67 |
| GSMUA_Achr5P09940_001 | Banana | mitochondrion | 42.48 | 27.31 |
| GSMUA_Achr4P33270_001 | Banana | nucleus | 47.06 | 27.07 |
| GSMUA_Achr7P17910_001 | Banana | nucleus | 26.14 | 24.69 |
| GSMUA_Achr3P19420_001 | Banana | nucleus | 41.18 | 22.18 |
| GSMUA_Achr10P... | Banana | nucleus | 33.33 | 19.54 |
| GSMUA_Achr3P02360_001 | Banana | nucleus | 33.99 | 19.33 |
| GSMUA_Achr9P01870_001 | Banana | nucleus | 35.29 | 18.75 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.68 | 17.86 |
| GSMUA_Achr8P30180_001 | Banana | nucleus | 35.29 | 17.31 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF-transcript_factor | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr3G13010_001 | EnsemblPlants:GSMUA_Achr3P13010_001 |
| EnsemblPlants:GSMUA_Achr3T13010_001 | InterPro:IPR001471 | InterPro:IPR036955 | UniProt:M0SE68 | PFAM:PF00847 | PIRSF:PIRSF038123 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI000296AFCD |
| SEG:seg | : | : | : | : | : |
Description
Putative AP2 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G13010_001]
Coordinates
chr3:+:9573230..9574184
Molecular Weight (calculated)
16475.2 Da
IEP (calculated)
6.921
GRAVY (calculated)
-0.578
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKGRAEAAH PPAEVGGAAG TRFRGVRKRP WGRFAAEIRD PCKKTRVWLG TFDSAEDAAR AYDAAAVALR GTKAKTNFPS LPSHSSTVEK QINPPPPPRV
101: LNGDDDCHSD CGSSSSVVDD DGDIVSLCRQ PLAFDLNLLP PSEDDLHDTA LRL
101: LNGDDDCHSD CGSSSSVVDD DGDIVSLCRQ PLAFDLNLLP PSEDDLHDTA LRL
001: MRRGRGSSAV AGPTVVAAIN GSVKEIRFRG VRKRPWGRFA AEIRDPWKKA RVWLGTFDSA EEAARAYDSA ARNLRGPKAK TNFPIDSSSP PPPNLRFNQI
101: RNQNQNQVDP FMDHRLFTDH QQQFPIVNRP TSSSMSSTVE SFSGPRPTTM KPATTKRYPR TPPVVPEDCH SDCDSSSSVI DDDDDIASSS RRRNPPFQFD
201: LNFPPLDCVD LFNGADDLHC TDLRL
101: RNQNQNQVDP FMDHRLFTDH QQQFPIVNRP TSSSMSSTVE SFSGPRPTTM KPATTKRYPR TPPVVPEDCH SDCDSSSSVI DDDDDIASSS RRRNPPFQFD
201: LNFPPLDCVD LFNGADDLHC TDLRL
Arabidopsis Description
ERF3Uncharacterized protein At1g50640 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV01]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.