Factsheet for GSMUA_Achr8P15820_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P00560_001
GSMUA_Achr2P12040_001
GSMUA_Achr2P18250_001
GSMUA_Achr3P27560_001
GSMUA_Achr4P21690_001
GSMUA_Achr4P23470_001
GSMUA_Achr4P30100_001
GSMUA_Achr7P00520_001
GSMUA_Achr7P04710_001
GSMUA_Achr8P14860_001
GSMUA_Achr8P14980_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28360.1	GSMUA_Achr3P27560_001	AT1G32540.1	21798944
AT1G28360.1	GSMUA_Achr7P04710_001	AT1G32540.1	21798944
AT1G28360.1	GSMUA_AchrUn_...	AT1G32540.1	21798944
AT1G28360.1	GSMUA_Achr1P00560_001	AT4G17680.1	21798944
AT1G28360.1	GSMUA_Achr2P12040_001	AT4G17680.1	21798944
AT1G28360.1	GSMUA_Achr2P18250_001	AT4G17680.1	21798944
AT1G28360.1	GSMUA_Achr4P21690_001	AT4G17680.1	21798944
AT1G28360.1	GSMUA_Achr4P30100_001	AT4G17680.1	21798944
AT1G28360.1	GSMUA_Achr8P14860_001	AT4G17680.1	21798944
AT1G28360.1	GSMUA_Achr11P...	AT4G26000.1	21798944
AT1G28360.1	GSMUA_Achr8P14980_001	AT4G26000.1	21798944
AT1G28360.1	GSMUA_Achr4P23470_001	AT5G61010.1	21798944
AT1G28360.1	GSMUA_Achr7P00520_001	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P00350_001	Banana	nucleus	34.71	53.64
TraesCS3B01G357600.1	Wheat	nucleus	52.35	51.15
TraesCS3A01G328100.1	Wheat	nucleus	51.76	50.87
TraesCS3D01G321700.1	Wheat	nucleus	51.76	50.87
EES01601	Sorghum	nucleus	47.65	45.76
Os05t0497200-01	Rice	nucleus	50.59	45.5
Zm00001d012584_P001	Maize	nucleus	44.12	45.45
Zm00001d043204_P001	Maize	nucleus	48.82	44.62
GSMUA_AchrUn_...	Banana	nucleus	28.24	44.44
TraesCS1D01G314700.1	Wheat	nucleus	47.06	43.48
TraesCS1B01G326500.1	Wheat	nucleus	47.06	43.48
GSMUA_Achr6P00240_001	Banana	nucleus	43.53	43.02
TraesCS1A01G314200.1	Wheat	nucleus	46.47	42.02
Zm00001d010676_P001	Maize	nucleus	50.59	41.95
CDY34107	Canola	nucleus	44.12	41.44
Bra032898.1-P	Field mustard	nucleus	44.12	41.44
HORVU1Hr1G067160.1	Barley	nucleus	46.47	41.15
CDY35734	Canola	nucleus	44.71	41.08
CDY30806	Canola	nucleus	44.12	40.98
Bra010881.1-P	Field mustard	nucleus	44.12	40.76
CDX90145	Canola	nucleus	44.12	40.76
GSMUA_Achr3P13010_001	Banana	nucleus	36.47	40.52
GSMUA_Achr7P03640_001	Banana	nucleus	39.41	40.36
Zm00001d038584_P001	Maize	nucleus	49.41	40.0
Bra030094.1-P	Field mustard	nucleus	41.76	39.89
CDY15674	Canola	nucleus	41.76	39.89
AT1G28360.1	Thale cress	nucleus	44.12	39.68
KXG22269	Sorghum	nucleus	49.41	39.25
GSMUA_AchrUn_...	Banana	nucleus	38.82	37.29
CDX94610	Canola	nucleus	35.88	36.75
GSMUA_Achr8P33590_001	Banana	nucleus	39.41	35.83
GSMUA_Achr4P06170_001	Banana	nucleus	38.82	35.68
GSMUA_Achr4P04060_001	Banana	mitochondrion	32.35	34.81
GSMUA_Achr3P29290_001	Banana	nucleus	32.35	34.59
GSMUA_Achr1P25890_001	Banana	nucleus	31.76	33.96
GSMUA_Achr1P18230_001	Banana	nucleus	37.65	33.68
GSMUA_Achr4P11430_001	Banana	nucleus	32.35	33.54
GSMUA_Achr4P06660_001	Banana	nucleus	35.88	31.77
GSMUA_Achr6P01440_001	Banana	nucleus	34.71	31.72
GSMUA_Achr6P35320_001	Banana	nucleus	26.47	31.47
GSMUA_Achr8P06870_001	Banana	nucleus	34.12	31.35
GSMUA_Achr5P26850_001	Banana	nucleus	32.94	29.32
GSMUA_Achr8P03550_001	Banana	nucleus	37.06	29.17
GSMUA_Achr3P23710_001	Banana	nucleus	34.12	28.71
GSMUA_Achr8P15830_001	Banana	nucleus	33.53	28.64
GSMUA_Achr4P23620_001	Banana	nucleus	36.47	27.68
GSMUA_Achr9P11480_001	Banana	nucleus	36.47	27.43
GSMUA_Achr6P00250_001	Banana	nucleus	38.24	27.2
GSMUA_Achr7P17910_001	Banana	nucleus	24.71	25.93
GSMUA_Achr5P09940_001	Banana	mitochondrion	35.88	25.63
GSMUA_Achr10P...	Banana	nucleus	32.35	24.77
GSMUA_Achr4P33270_001	Banana	nucleus	35.88	22.93
GSMUA_Achr3P19420_001	Banana	nucleus	35.29	21.13
GSMUA_Achr3P02360_001	Banana	nucleus	30.59	19.33
GSMUA_Achr10P...	Banana	nucleus	28.82	18.77
GSMUA_AchrUn_...	Banana	nucleus	29.41	17.86
GSMUA_Achr9P01870_001	Banana	nucleus	29.41	17.36
GSMUA_Achr8P30180_001	Banana	nucleus	30.59	16.67

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr8G15820_001	EnsemblPlants:GSMUA_Achr8P15820_001
EnsemblPlants:GSMUA_Achr8T15820_001	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0TQT5	PFAM:PF00847	PIRSF:PIRSF038123
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000295C068
SEG:seg	:	:	:	:	:

Description

Putative AP2 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G15820_001]

Coordinates

chr8:+:13606668..13607180

Molecular Weight (calculated)

18367.8 Da

IEP (calculated)

10.879

GRAVY (calculated)

-0.592

Length

170 amino acids

Sequence
(BLAST)

001: MEGTRSGGER KQQQQHYRGV RKRPWGRYAA EIRDPWRKAR VWLGTFDTPV EAALAYDRAA RSLRGIKAKT NFPHQFAPAP PPPPNPPPSF AAALDLNHPS
101: LHLWLGPTPT PPSPSPPSPP PSTKLALGGF VPREPPAAAT SFYAVSAGGL PLDLNEPPPQ LAPALSPLFN

Best Arabidopsis Sequence Match ( AT1G28360.1 )
(BLAST)

001: MASTTCAREV HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARFLRG IKAKTNFPSP LSLDLNHLPS APSAATAAAN NQPHQHQQLW
101: FAAPPPVPPS SDHHHQHHRI FLRTGVLNDK TSDYSSTEAP LYFTSSPNTA TSSPGYQVVG FPMMNSSPSP VTVRRGLAID LNEPPPLWL

Arabidopsis Description

ERF12Ethylene-responsive transcription factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q94ID6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.