Factsheet for Zm00001d012584_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000030_P001
Zm00001d015093_P001
Zm00001d017649_P001
Zm00001d029973_P001
Zm00001d029988_P001
Zm00001d043365_P001
Zm00001d047069_P001
Zm00001d049525_P004
Zm00001d051484_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28360.1	Zm00001d049525_P004	AT1G32540.1	21798944
AT1G28360.1	Zm00001d017649_P001	AT4G17680.1	21798944
AT1G28360.1	Zm00001d029988_P001	AT4G17680.1	21798944
AT1G28360.1	Zm00001d047069_P001	AT4G17680.1	21798944
AT1G28360.1	Zm00001d051484_P001	AT4G17680.1	21798944
AT1G28360.1	Zm00001d000030_P001	AT4G26000.1	21798944
AT1G28360.1	Zm00001d015093_P001	AT4G26000.1	21798944
AT1G28360.1	Zm00001d029973_P001	AT4G26000.1	21798944
AT1G28360.1	Zm00001d043365_P001	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043204_P001	Maize	nucleus	81.82	72.58
EES01601	Sorghum	nucleus	77.58	72.32
TraesCS3D01G321700.1	Wheat	nucleus	66.06	63.01
TraesCS3B01G357600.1	Wheat	nucleus	64.24	60.92
TraesCS3A01G328100.1	Wheat	nucleus	63.64	60.69
PGSC0003DMT400076408	Potato	nucleus	41.82	45.1
Zm00001d010676_P001	Maize	nucleus	55.76	44.88
Solyc02g077840.1.1	Tomato	nucleus	41.82	44.81
Zm00001d038584_P001	Maize	nucleus	56.97	44.76
GSMUA_Achr8P15820_001	Banana	nucleus	45.45	44.12
VIT_10s0003g00130.t01	Wine grape	nucleus	40.0	43.42
KRH21385	Soybean	nucleus	40.0	40.49
KRH10926	Soybean	nucleus	41.21	39.53
CDY34107	Canola	nucleus	41.82	38.12
Bra032898.1-P	Field mustard	nucleus	41.82	38.12
CDX90145	Canola	nucleus	41.82	37.5
Bra010881.1-P	Field mustard	nucleus	41.82	37.5
CDY35734	Canola	nucleus	41.82	37.3
CDY30806	Canola	nucleus	41.21	37.16
CDY15674	Canola	nucleus	40.0	37.08
Bra030094.1-P	Field mustard	nucleus	40.0	37.08
CDX94610	Canola	nucleus	36.97	36.75
AT1G28360.1	Thale cress	nucleus	41.21	35.98
Zm00001d001907_P001	Maize	nucleus, plastid	33.33	31.25
Zm00001d026563_P001	Maize	nucleus	33.33	30.9
Zm00001d053859_P001	Maize	nucleus	35.76	30.1
Zm00001d014565_P001	Maize	nucleus	33.33	28.5
Zm00001d024324_P001	Maize	nucleus	32.12	28.49
Zm00001d036536_P001	Maize	nucleus	33.94	28.43
Zm00001d053707_P001	Maize	nucleus	35.76	28.37
Zm00001d038585_P001	Maize	mitochondrion, nucleus	37.58	28.18
Zm00001d049364_P001	Maize	nucleus, plastid	34.55	28.08
Zm00001d015639_P001	Maize	nucleus	35.76	27.96
Zm00001d002364_P001	Maize	nucleus, plastid	37.58	27.93
Zm00001d026271_P001	Maize	nucleus, plastid	36.36	27.03
Zm00001d043205_P001	Maize	nucleus	38.18	26.58
Zm00001d000339_P001	Maize	nucleus	36.36	25.75
Zm00001d012585_P001	Maize	nucleus	37.58	25.73
Zm00001d024436_P001	Maize	nucleus	26.67	23.66
Zm00001d050948_P001	Maize	nucleus	33.33	18.71
Zm00001d016623_P001	Maize	nucleus	29.7	18.49
Zm00001d003871_P001	Maize	plastid	30.3	18.45
Zm00001d025298_P001	Maize	plastid	30.3	18.38
Zm00001d007119_P001	Maize	nucleus	30.3	16.89
Zm00001d022488_P001	Maize	nucleus	30.91	16.19

Protein Annotations

EntrezGene:103636576	MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ProteinID:AQK99909.1
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	UniProt:K7V473	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31677
PANTHER:PTHR31677:SF41	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000220B0D5	EnsemblPlantsGene:Zm00001d012584	EnsemblPlants:Zm00001d012584_P001
EnsemblPlants:Zm00001d012584_T001	SEG:seg	:	:	:	:

Description

AP2-EREBP-transcription factor 29Putative AP2/EREBP transcription factor superfamily protein

Coordinates

chr8:-:176883525..176884022

Molecular Weight (calculated)

17836.9 Da

IEP (calculated)

10.286

GRAVY (calculated)

-0.725

Length

165 amino acids

Sequence
(BLAST)

001: MDPTPRAVLS HSSSGGAKGG GGGGSHAHYR GVRKRPWGRY ASEIRDPWKK TRVWLGTFDT PLEAALAYDR AARTLRGAKA RTNFPDDHAG QGQLQQQHLR
101: RRQHPPPQHV SFGGVGVDCA SPWHFVCFQT PTTAPATETP STALELGTGR RCGGLPFDLN EAPSC

Best Arabidopsis Sequence Match ( AT1G28360.1 )
(BLAST)

001: MASTTCAREV HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARFLRG IKAKTNFPSP LSLDLNHLPS APSAATAAAN NQPHQHQQLW
101: FAAPPPVPPS SDHHHQHHRI FLRTGVLNDK TSDYSSTEAP LYFTSSPNTA TSSPGYQVVG FPMMNSSPSP VTVRRGLAID LNEPPPLWL

Arabidopsis Description

ERF12Ethylene-responsive transcription factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q94ID6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.