CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95394
KRH02776
KRH04275
KRH04330
KRH12329
KRH19104
KRH28216
KRH37335
KRH54704
KRH57556
KRH58208
KRH63230
KRH67075
KRH77212
KRH77271

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28360.1	KRH04330	AT1G32540.1	21798944
AT1G28360.1	KRH58208	AT1G32540.1	21798944
AT1G28360.1	KRH77212	AT1G32540.1	21798944
AT1G28360.1	KRH04275	AT4G17680.1	21798944
AT1G28360.1	KRH28216	AT4G17680.1	21798944
AT1G28360.1	KRH57556	AT4G17680.1	21798944
AT1G28360.1	KRH77271	AT4G17680.1	21798944
AT1G28360.1	KRH02776	AT4G26000.1	21798944
AT1G28360.1	KRH12329	AT4G26000.1	21798944
AT1G28360.1	KRH19104	AT4G26000.1	21798944
AT1G28360.1	KRH37335	AT4G26000.1	21798944
AT1G28360.1	KRG95394	AT5G22355.1	21798944
AT1G28360.1	KRH67075	AT5G22355.1	21798944
AT1G28360.1	KRH54704	AT5G61010.1	21798944
AT1G28360.1	KRH63230	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21385	Soybean	nucleus	87.21	92.02
VIT_10s0003g00130.t01	Wine grape	nucleus	59.88	67.76
PGSC0003DMT400076408	Potato	nucleus	55.23	62.09
Solyc02g077840.1.1	Tomato	nucleus	55.23	61.69
Bra010881.1-P	Field mustard	nucleus	55.81	52.17
CDX90145	Canola	nucleus	55.81	52.17
CDY35734	Canola	nucleus	55.81	51.89
KRH32582	Soybean	nucleus	27.33	51.65
CDY30806	Canola	nucleus	54.07	50.82
Bra030094.1-P	Field mustard	nucleus	52.33	50.56
CDY15674	Canola	nucleus	52.33	50.56
AT1G28360.1	Thale cress	nucleus	54.65	49.74
GSMUA_Achr6P00240_001	Banana	nucleus	49.42	49.42
CDY34107	Canola	nucleus	51.74	49.17
Bra032898.1-P	Field mustard	nucleus	51.74	49.17
CDX94610	Canola	nucleus	45.93	47.59
KRH26242	Soybean	nucleus	33.14	44.19
Zm00001d012584_P001	Maize	nucleus	39.53	41.21
TraesCS3D01G321700.1	Wheat	nucleus	40.12	39.88
TraesCS3A01G328100.1	Wheat	nucleus	39.53	39.31
TraesCS3B01G357600.1	Wheat	nucleus	39.53	39.08
EES01601	Sorghum	nucleus	38.95	37.85
KRH55195	Soybean	nucleus	40.12	37.7
Zm00001d043204_P001	Maize	nucleus	39.53	36.56
Os05t0497200-01	Rice	nucleus	40.12	36.51
KRH22040	Soybean	nucleus	39.53	35.23
KRH27281	Soybean	nucleus	39.53	35.23
KRH46237	Soybean	nucleus	41.28	33.81
KRG98699	Soybean	nucleus	41.28	33.49
TraesCS1D01G314700.1	Wheat	nucleus	34.88	32.61
TraesCS1B01G326500.1	Wheat	nucleus	34.88	32.61
KRH25634	Soybean	nucleus	38.37	32.2
KRH67315	Soybean	nucleus	31.4	31.4
TraesCS1A01G314200.1	Wheat	nucleus	34.3	31.38
HORVU1Hr1G067160.1	Barley	nucleus	34.88	31.25
KRH55920	Soybean	nucleus	37.79	31.25
KRH21384	Soybean	nucleus	40.12	31.08
KRH73332	Soybean	nucleus	38.37	30.7
KRH10927	Soybean	nucleus	38.95	30.59
KRH14810	Soybean	nucleus	37.21	30.33
KRG91757	Soybean	mitochondrion, nucleus	24.42	29.58
Zm00001d038584_P001	Maize	nucleus	35.47	29.05
KRH73797	Soybean	nucleus	37.21	28.83
KRH14334	Soybean	nucleus	37.21	28.83
Zm00001d010676_P001	Maize	nucleus	34.3	28.78
KRH45546	Soybean	nucleus	29.07	27.78
KRH35019	Soybean	nucleus, plastid	24.42	26.75
KXG22269	Sorghum	nucleus	33.14	26.64
KRH06790	Soybean	nucleus	27.33	20.0
KRH08427	Soybean	nucleus	29.65	18.61
KRH70088	Soybean	nucleus	29.07	18.25
KRH11206	Soybean	nucleus	26.16	14.42
KRH21045	Soybean	nucleus	26.74	14.29
KRH50906	Soybean	nucleus	27.91	13.87
KRH45585	Soybean	nucleus	28.49	13.84
KRG99434	Soybean	nucleus	28.49	13.84
KRH74517	Soybean	nucleus	29.07	13.77
KRH02219	Soybean	nucleus	27.91	13.56
KRH69639	Soybean	nucleus	29.65	13.04
KRH75649	Soybean	nucleus	16.28	10.11

Protein Annotations

EntrezGene:100802655	MapMan:15.5.7.1	Gene3D:3.30.730.10	EMBL:ACUP02009166	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_15G077000	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	UniProt:I1MEL8	InterPro:IPR001471	InterPro:IPR036955	EnsemblPlants:KRH10926	ProteinID:KRH10926
ProteinID:KRH10926.1	PFAM:PF00847	PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000233AD0D	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr15:+:5920704..5922109

Molecular Weight (calculated)

18762.4 Da

IEP (calculated)

10.275

GRAVY (calculated)

-0.442

Length

172 amino acids

Sequence
(BLAST)

001: MAPSSSASAS REGHYRGVRK RPWGRYAAEI RDPWKKTRVW LGTFDTPEEA ALAYDGAARS LRGAKAKTNF PPAPPLCLDL NVPSSDHRWP HHVPPRSLVL
101: SDFLHTAVLR DIDPPQQPFP PAAAVAHRNP HGGAMPVGGG VQVMEGSPTA SFLGFVRRGI PIDLNEPPPM WL

Best Arabidopsis Sequence Match ( AT1G28360.1 )
(BLAST)

001: MASTTCAREV HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARFLRG IKAKTNFPSP LSLDLNHLPS APSAATAAAN NQPHQHQQLW
101: FAAPPPVPPS SDHHHQHHRI FLRTGVLNDK TSDYSSTEAP LYFTSSPNTA TSSPGYQVVG FPMMNSSPSP VTVRRGLAID LNEPPPLWL

Arabidopsis Description

ERF12Ethylene-responsive transcription factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q94ID6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.