Factsheet for Os05t0497200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 23629832

gfp PMID: 23629832 doi

D Ren, Y Li, F Zhao, X Sang, J Shi, N Wang, S Guo, Y Ling, C Zhang, Z Yang, G He

Rice Research Institute, Southwest University, Chongqing 400715, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0763750-01
Os02t0125500-00
Os02t0687500-01
Os08t0159500-01
Os10t0564000-01
Os10t0565500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28360.1	Os08t0159500-01	AT1G32540.1	21798944
AT1G28360.1	Os02t0687500-01	AT4G17680.1	21798944
AT1G28360.1	Os10t0565500-01	AT4G17680.1	21798944
AT1G28360.1	Os02t0125500-00	AT4G26000.1	21798944
AT1G28360.1	Os10t0564000-01	AT4G26000.1	21798944
AT1G28360.1	Os01t0763750-01	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G326500.1	Wheat	nucleus	60.85	62.5
HORVU1Hr1G067160.1	Barley	nucleus	62.43	61.46
TraesCS1D01G314700.1	Wheat	nucleus	59.26	60.87
TraesCS1A01G314200.1	Wheat	nucleus	60.32	60.64
Zm00001d010676_P001	Maize	nucleus	60.32	55.61
Zm00001d038584_P001	Maize	nucleus	59.79	53.81
KXG22269	Sorghum	nucleus	59.79	52.8
GSMUA_Achr8P15820_001	Banana	nucleus	45.5	50.59
PGSC0003DMT400076408	Potato	nucleus	34.92	43.14
Solyc02g077840.1.1	Tomato	nucleus	34.92	42.86
VIT_10s0003g00130.t01	Wine grape	nucleus	33.86	42.11
KRH21385	Soybean	nucleus	35.98	41.72
KRH10926	Soybean	nucleus	36.51	40.12
Bra032898.1-P	Field mustard	nucleus	35.45	37.02
CDY34107	Canola	nucleus	35.45	37.02
Bra010881.1-P	Field mustard	nucleus	35.98	36.96
CDX90145	Canola	nucleus	35.98	36.96
CDY35734	Canola	nucleus	35.98	36.76
Bra030094.1-P	Field mustard	nucleus	34.39	36.52
CDY15674	Canola	nucleus	34.39	36.52
CDY30806	Canola	nucleus	34.92	36.07
AT1G28360.1	Thale cress	nucleus	34.39	34.39
CDX94610	Canola	nucleus	29.63	33.73
Os04t0669200-01	Rice	nucleus	31.75	31.58
Os06t0691100-00	Rice	nucleus	30.69	30.85
Os04t0610400-01	Rice	nucleus	31.22	26.58
Os01t0797600-01	Rice	nucleus, plastid	32.8	26.38
Os05t0497300-01	Rice	nucleus	31.75	25.42
Os08t0173700-01	Rice	nucleus	21.69	23.43
Os02t0520000-00	Rice	nucleus	26.98	21.34
Os04t0399800-00	Rice	nucleus	28.04	18.15
Os02t0594300-00	Rice	nucleus	30.69	16.81
Os07t0669500-01	Rice	nucleus, plastid	25.93	15.41

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	EntrezGene:4339208	ProteinID:AAT07582.1	EMBL:AK242393	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ProteinID:BAF17855.1	ProteinID:BAS94720.1	InterPro:DNA-bd_dom_sf	ProteinID:EEE64227.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	EnsemblPlantsGene:Os05g0497200
EnsemblPlants:Os05t0497200-01	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31677	PANTHER:PTHR31677:SF41
UniProt:Q75K84	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000035E001	RefSeq:XP_015638389.1	SEG:seg

Description

ETHYLENE RESPONSE FACTOR 130AP2/ERF (APETALA2/ethylene-responsive factor) protein, Regulation of spikelet meristem determinancy and floral organ identity (Os05t0497200-01)

Coordinates

chr5:-:24427953..24428867

Molecular Weight (calculated)

19790.4 Da

IEP (calculated)

10.163

GRAVY (calculated)

-0.395

Length

189 amino acids

Sequence
(BLAST)

001: MELDMGAGGG GGVVGGGRAE AHYRGVRKRP WGRYAAEIRD PWKKTRVWLG TYDTPVEAAL AYDRAAVALR GVKARTNFGS GSSGGGGVGG HGHGHSHAQL
101: PQLHHRMHPP RPPQGPGHFG GLDISHPSPW HYVYFPARVQ AMAPAAAGHV AAHVAASLPS TTLELRTGPS AGELPFDLNE PPPALLFGS

Best Arabidopsis Sequence Match ( AT1G28360.1 )
(BLAST)

001: MASTTCAREV HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARFLRG IKAKTNFPSP LSLDLNHLPS APSAATAAAN NQPHQHQQLW
101: FAAPPPVPPS SDHHHQHHRI FLRTGVLNDK TSDYSSTEAP LYFTSSPNTA TSSPGYQVVG FPMMNSSPSP VTVRRGLAID LNEPPPLWL

Arabidopsis Description

ERF12Ethylene-responsive transcription factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q94ID6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.