Factsheet for Os04t0399800-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G288700.1	Wheat	plastid	65.41	72.9
HORVU2Hr1G071470.1	Barley	plastid	65.41	72.62
TraesCS2B01G305500.1	Wheat	plastid	65.07	72.52
TraesCS2D01G286900.1	Wheat	plastid	64.73	72.14
Zm00001d025298_P001	Maize	plastid	63.7	68.38
Zm00001d003871_P001	Maize	plastid	61.99	66.79
EES10693	Sorghum	plastid	63.01	64.34
Os02t0520000-00	Rice	nucleus	48.97	59.83
GSMUA_Achr3P02360_001	Banana	nucleus	50.0	54.28
GSMUA_Achr10P...	Banana	nucleus	48.29	54.02
AT5G13910.1	Thale cress	nucleus	33.22	45.97
Bra006222.1-P	Field mustard	nucleus	32.88	45.5
CDX78545	Canola	nucleus	32.53	44.81
CDX70526	Canola	nucleus	32.19	44.34
KRH70088	Soybean	nucleus	41.1	43.8
KRH08427	Soybean	nucleus	40.75	43.43
VIT_14s0068g00860.t01	Wine grape	nucleus	37.67	42.31
KRH06790	Soybean	nucleus	33.9	42.13
PGSC0003DMT400005596	Potato	nucleus, plastid	25.0	37.24
Os08t0173700-01	Rice	nucleus	21.92	36.57
Os04t0669200-01	Rice	nucleus	20.89	32.11
Os06t0691100-00	Rice	nucleus	20.55	31.91
Solyc11g045680.1.1	Tomato	nucleus, plastid	30.14	30.24
PGSC0003DMT400005585	Potato	nucleus, plastid	29.45	29.66
Bra023440.1-P	Field mustard	nucleus	32.53	28.19
Os05t0497200-01	Rice	nucleus	18.15	28.04
CDX91091	Canola	nucleus	32.53	27.94
Os05t0497300-01	Rice	nucleus	22.26	27.54
CDX85621	Canola	nucleus	32.19	27.49
Solyc11g045690.1.1	Tomato	nucleus, plastid	28.42	27.48
Os04t0610400-01	Rice	nucleus	20.89	27.48
Bra008793.1-P	Field mustard	nucleus	29.79	27.1
CDY72607	Canola	nucleus	29.79	26.93
Os01t0797600-01	Rice	nucleus, plastid	20.89	25.96
Os07t0669500-01	Rice	nucleus, plastid	27.4	25.16
Os02t0594300-00	Rice	nucleus	22.95	19.42

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	EntrezGene:4335720	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ProteinID:BAF14594.1
ProteinID:BAS89032.1	ProteinID:CAE05276.3	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	EnsemblPlantsGene:Os04g0399800	EnsemblPlants:Os04t0399800-00	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31677	PANTHER:PTHR31677:SF40	UniProt:Q7XL79	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI00001B213C	RefSeq:XP_015635285.1	SEG:seg	:	:

Description

ETHYLENE RESPONSE FACTOR 82Similar to Ethylene-responsive transcription factor 12 (Ethylene-responsive element binding factor 12) (EREBP-12) (AtERF12). (Os04t0399800-00)

Coordinates

chr4:+:19790424..19791452

Molecular Weight (calculated)

29765.8 Da

IEP (calculated)

4.306

GRAVY (calculated)

-0.375

Length

292 amino acids

Sequence
(BLAST)

001: MMNFSSYFYS SSAAAAGGGG GGGEKKSSSS SASKKKQQQA AAAEGGNNQT RYLGVRRRPW GRYAAEIRDP ATKERHWLGT FDTAEEAAVA YDRAARSLRG
101: ARARTNFAYP DLPPGSSVTP YLSPDLSADA SDQLLQPFYA NPSAAAALPT PAAVMAGGGG VEFGGEYMYG GGVDMSSLMD DIAAMPDDLP PSVTGGGGGF
201: ASSDEYSSGG GGMVDDVSMY CGGNGGGSSW CDASDFASYS SSSPAAAAAA GSHGMYFEEG YVHSPLFSPM PAVDDAGADG FQLGGSSSSY YY

Best Arabidopsis Sequence Match ( AT5G13910.1 )
(BLAST)

001: MNTTSSKSKK KQDDQVGTRF LGVRRRPWGR YAAEIRDPTT KERHWLGTFD TAEEAALAYD RAARSMRGTR ARTNFVYSDM PPSSSVTSIV SPDDPPPPPP
101: PPAPPSNDPV DYMMMFNQYS STDSPMLQPH CDQVDSYMFG GSQSSNSYCY SNDSSNELPP LPSDLSNSCY SQPQWTWTGD DYSSEYVHSP MFSRMPPVSD
201: SFPQGFNYFG S

Arabidopsis Description

LEPLEP [Source:UniProtKB/TrEMBL;Acc:A0A178UQP2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.