Factsheet for Bra006222.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78545	Canola	nucleus	95.73	95.28
AT5G13910.1	Thale cress	nucleus	82.94	82.94
Bra023440.1-P	Field mustard	nucleus	87.2	54.6
Bra008793.1-P	Field mustard	nucleus	76.78	50.47
VIT_14s0068g00860.t01	Wine grape	nucleus	53.08	43.08
KRH06790	Soybean	nucleus	47.87	42.98
KRH70088	Soybean	nucleus	52.61	40.51
PGSC0003DMT400005596	Potato	nucleus, plastid	36.49	39.29
KRH08427	Soybean	nucleus	49.76	38.32
Bra030076.1-P	Field mustard	nucleus	41.23	36.1
Bra010901.1-P	Field mustard	nucleus	39.81	35.9
Zm00001d003871_P001	Maize	plastid	43.13	33.58
TraesCS2A01G288700.1	Wheat	plastid	41.23	33.21
HORVU2Hr1G071470.1	Barley	plastid	41.23	33.08
Os04t0399800-00	Rice	nucleus	45.5	32.88
TraesCS2B01G305500.1	Wheat	plastid	40.76	32.82
TraesCS2D01G286900.1	Wheat	plastid	40.76	32.82
Os02t0520000-00	Rice	nucleus	36.97	32.64
Zm00001d016623_P001	Maize	nucleus	40.28	32.08
Zm00001d025298_P001	Maize	plastid	41.23	31.99
GSMUA_Achr3P02360_001	Banana	nucleus	40.28	31.6
GSMUA_Achr10P...	Banana	nucleus	38.86	31.42
PGSC0003DMT400005585	Potato	nucleus, plastid	43.13	31.38
Solyc11g045680.1.1	Tomato	nucleus, plastid	43.13	31.27
Bra032901.1-P	Field mustard	nucleus	23.7	30.86
Bra026949.1-P	Field mustard	nucleus	32.23	30.77
KXG30301	Sorghum	nucleus, plastid	39.81	30.43
EES10693	Sorghum	plastid	41.23	30.42
Bra027270.1-P	Field mustard	nucleus	22.75	30.0
Bra032900.1-P	Field mustard	nucleus	22.27	29.75
Bra010880.1-P	Field mustard	nucleus	24.17	29.65
Bra030095.1-P	Field mustard	nucleus	23.22	29.17
Solyc11g045690.1.1	Tomato	nucleus, plastid	40.76	28.48
Bra039658.1-P	Field mustard	nucleus	22.27	26.7
Bra036016.1-P	Field mustard	nucleus	24.17	26.42
Bra032898.1-P	Field mustard	nucleus	22.27	25.97
Bra030094.1-P	Field mustard	nucleus	21.8	25.84
Bra015266.1-P	Field mustard	nucleus	22.27	25.68
Bra038107.1-P	Field mustard	nucleus	24.17	25.5
Bra030957.1-P	Field mustard	nucleus	22.75	25.4
Bra021594.1-P	Field mustard	nucleus	25.12	24.88
Bra001588.1-P	Field mustard	nucleus	24.64	24.64
Bra010881.1-P	Field mustard	nucleus	21.33	24.46
Bra018864.1-P	Field mustard	nucleus	22.75	23.65
Bra003701.1-P	Field mustard	nucleus	21.8	23.59
Bra006325.1-P	Field mustard	nucleus	21.33	22.96
Bra012499.1-P	Field mustard	nucleus	31.28	22.37
Bra002168.1-P	Field mustard	nucleus, plastid	33.18	22.08
Bra010972.1-P	Field mustard	nucleus	31.28	21.93
Bra001784.1-P	Field mustard	nucleus	22.27	21.86
Bra006466.1-P	Field mustard	nucleus, plastid	31.75	21.61
Bra023684.1-P	Field mustard	nucleus, plastid	31.75	21.41
Bra035792.1-P	Field mustard	mitochondrion, nucleus	22.27	20.89
Bra032881.1-P	Field mustard	nucleus	14.22	20.83
Bra038261.1-P	Field mustard	nucleus	21.8	20.54
Bra026942.1-P	Field mustard	nucleus	27.49	19.73
Bra019801.1-P	Field mustard	nucleus	27.01	17.54

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra006222	EnsemblPlants:Bra006222.1
EnsemblPlants:Bra006222.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M4CPT3	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31677	PANTHER:PTHR31677:SF40	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000253FACE	SEG:seg

Description

AT5G13910 (E=8e-063) LEP | LEP (LEAFY PETIOLE); DNA binding / transcription factor

Coordinates

chrA03:-:2590828..2591463

Molecular Weight (calculated)

23748.4 Da

IEP (calculated)

5.261

GRAVY (calculated)

-0.776

Length

211 amino acids

Sequence
(BLAST)

001: MNTSKTKKKQ EEVGTKFLGV RRRPWGRYAA EIRDPTTKER HWLGTFDTAE EAALAYDRAS RSMRGTRART NFVYSDMPPS SSVTSIVSPD DPPPPPPAAS
101: LTCPNDPVDY MMMFNQYSST DSPMLQPHSD QMESSYMFGG SPSCYSNSSC ELPPLPSDLS SSCYSQQQWS VEDFSSANYF EGEYVHSPMF SRMPSVSDSL
201: PHGFNHFYSY N

Best Arabidopsis Sequence Match ( AT5G13910.1 )
(BLAST)

001: MNTTSSKSKK KQDDQVGTRF LGVRRRPWGR YAAEIRDPTT KERHWLGTFD TAEEAALAYD RAARSMRGTR ARTNFVYSDM PPSSSVTSIV SPDDPPPPPP
101: PPAPPSNDPV DYMMMFNQYS STDSPMLQPH CDQVDSYMFG GSQSSNSYCY SNDSSNELPP LPSDLSNSCY SQPQWTWTGD DYSSEYVHSP MFSRMPPVSD
201: SFPQGFNYFG S

Arabidopsis Description

LEPLEP [Source:UniProtKB/TrEMBL;Acc:A0A178UQP2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.