Factsheet for Solyc11g045680.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 6
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400005585	Potato	nucleus, plastid	87.29	87.59
Solyc11g045690.1.1	Tomato	nucleus, plastid	85.91	82.78
CDX70526	Canola	nucleus	32.3	44.34
AT5G13910.1	Thale cress	nucleus	31.62	43.6
Bra006222.1-P	Field mustard	nucleus	31.27	43.13
CDX78545	Canola	nucleus	30.93	42.45
KRH06790	Soybean	nucleus	32.65	40.43
KRH70088	Soybean	nucleus	37.11	39.42
KRH08427	Soybean	nucleus	36.08	38.32
VIT_14s0068g00860.t01	Wine grape	nucleus	31.96	35.77
Solyc04g072300.1.1	Tomato	mitochondrion, nucleus	18.56	33.75
HORVU2Hr1G071470.1	Barley	plastid	30.24	33.46
EES10693	Sorghum	plastid	32.3	32.87
TraesCS2D01G286900.1	Wheat	plastid	29.55	32.82
TraesCS2B01G305500.1	Wheat	plastid	29.55	32.82
TraesCS2A01G288700.1	Wheat	plastid	29.55	32.82
Zm00001d003871_P001	Maize	plastid	30.24	32.47
Zm00001d025298_P001	Maize	plastid	30.24	32.35
Solyc02g077840.1.1	Tomato	nucleus	16.49	31.17
Os02t0520000-00	Rice	nucleus	25.43	30.96
Zm00001d016623_P001	Maize	nucleus	27.84	30.57
KXG30301	Sorghum	nucleus, plastid	28.87	30.43
Os04t0399800-00	Rice	nucleus	30.24	30.14
GSMUA_Achr10P...	Banana	nucleus	26.8	29.89
GSMUA_Achr3P02360_001	Banana	nucleus	27.49	29.74
Bra008793.1-P	Field mustard	nucleus	29.55	26.79
CDY72607	Canola	nucleus	29.55	26.63
Solyc07g049490.1.1	Tomato	nucleus	17.53	25.76
CDX91091	Canola	nucleus	29.9	25.59
Bra023440.1-P	Field mustard	nucleus	29.55	25.52
CDX85621	Canola	nucleus	29.55	25.15
Solyc12g005960.1.1	Tomato	nucleus	15.81	23.83
Solyc03g006320.1.1	Tomato	nucleus, plastid	17.53	23.61
Solyc10g006130.1.1	Tomato	mitochondrion, nucleus	17.53	23.08
Solyc07g053740.1.1	Tomato	nucleus	17.53	22.67
Solyc10g009110.1.1	Tomato	nucleus	16.84	22.07
Solyc07g064890.1.1	Tomato	nucleus	17.53	21.25
Solyc01g067540.1.1	Tomato	nucleus	22.34	20.25
Solyc05g013540.1.1	Tomato	nucleus	23.37	17.62

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.1	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
UniProt:K4D8N2	PFAM:PF00847	PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31677
PANTHER:PTHR31677:SF9	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:Solyc11g045680.1	EnsemblPlants:Solyc11g045680.1.1	UniParc:UPI000276A8FF
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:+:28041182..28042398

Molecular Weight (calculated)

33184.5 Da

IEP (calculated)

5.737

GRAVY (calculated)

-1.024

Length

291 amino acids

Sequence
(BLAST)

001: MDLIKSSTSS STSKSTKPRK NNGTSNQSVK QKTEEQQSNF RYLGVRRRPW GRYAAEIRDP NTKERHWLGT FDTAEEAALA YDRAARSMRV NNKSNKPTRT
101: NFVYSDMPHG YSVTCIVSPD DQYQHHHHHQ QQQLLIFGQT ENNPAPNVDY GAHFSHFSLS NMNNIGGDSY DDGEFALQHY CNPNYDVHME DGYRYDSNTT
201: STELPPLPED ITSSGYYYNL SSEFPYSEMG YNSKNEMIIG TNNEYQYGAS TITTTSSTTT TAGSFNYFGF DDCLQPLQDE SNNNRLGYFF S

Best Arabidopsis Sequence Match ( AT5G13910.1 )
(BLAST)

001: MNTTSSKSKK KQDDQVGTRF LGVRRRPWGR YAAEIRDPTT KERHWLGTFD TAEEAALAYD RAARSMRGTR ARTNFVYSDM PPSSSVTSIV SPDDPPPPPP
101: PPAPPSNDPV DYMMMFNQYS STDSPMLQPH CDQVDSYMFG GSQSSNSYCY SNDSSNELPP LPSDLSNSCY SQPQWTWTGD DYSSEYVHSP MFSRMPPVSD
201: SFPQGFNYFG S

Arabidopsis Description

LEPLEP [Source:UniProtKB/TrEMBL;Acc:A0A178UQP2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.