Factsheet for Solyc10g006130.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g047690.2.1
Solyc09g091440.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50640.1	Solyc05g047690.2.1	AT2G45640.1	16429262
AT1G50640.1	Solyc09g091440.2.1	AT4G38130.1	16429262

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037359	Potato	mitochondrion, nucleus	96.38	95.52
Solyc07g064890.1.1	Tomato	nucleus	80.09	73.75
GSMUA_Achr3P13010_001	Banana	nucleus	46.61	67.32
VIT_12s0059g01460.t01	Wine grape	nucleus	55.2	59.8
KRH14810	Soybean	nucleus	56.56	59.24
GSMUA_Achr4P06170_001	Banana	nucleus	49.32	58.92
CDY37113	Canola	mitochondrion, nucleus	55.2	58.65
Bra018864.1-P	Field mustard	nucleus	53.85	58.62
GSMUA_Achr4P04060_001	Banana	mitochondrion	41.63	58.23
CDY22810	Canola	nucleus	53.39	58.13
GSMUA_Achr1P18230_001	Banana	nucleus	49.77	57.89
AT1G50640.1	Thale cress	mitochondrion, nucleus	58.82	57.78
KRH73332	Soybean	nucleus	55.66	57.21
Solyc07g049490.1.1	Tomato	nucleus	48.42	54.04
Solyc12g005960.1.1	Tomato	nucleus	42.99	49.22
GSMUA_Achr4P11430_001	Banana	nucleus	34.84	46.95
Solyc02g077840.1.1	Tomato	nucleus	31.22	44.81
Solyc07g053740.1.1	Tomato	nucleus	34.84	34.22
Solyc10g009110.1.1	Tomato	nucleus	33.94	33.78
Solyc03g006320.1.1	Tomato	nucleus, plastid	32.13	32.87
Solyc04g072300.1.1	Tomato	mitochondrion, nucleus	19.91	27.5
Solyc11g045680.1.1	Tomato	nucleus, plastid	23.08	17.53
Solyc05g013540.1.1	Tomato	nucleus	28.96	16.58
Solyc11g045690.1.1	Tomato	nucleus, plastid	22.62	16.56
Solyc01g067540.1.1	Tomato	nucleus	22.17	15.26

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:K4CXE5
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31677	PANTHER:PTHR31677:SF17	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:Solyc10g006130.1	EnsemblPlants:Solyc10g006130.1.1	UniParc:UPI0001D64C42	SEG:seg	:

Description

No Description!

Coordinates

chr10:-:863907..864572

Molecular Weight (calculated)

24391.5 Da

IEP (calculated)

8.817

GRAVY (calculated)

-0.738

Length

221 amino acids

Sequence
(BLAST)

001: MRRGRATPAA AAAAVKPDGS GGLKEIRFRG VRKRPWGRFA AEIRDPWKKT RVWLGTFDSA EDAAKAYDAA ARTLRGPKAK TNFPLPMYSQ HHQFNRSLNP
101: NDRLVDPRLY SQEAPIICQR PTSSSMSSTV ESFSGPRPPR QQTAVLPSRK HPRSPPVEPD DCRSDCDSSS SVVEDGDCEG GNDNIVSSSL RNPLPFDLNF
201: PPPMDDVYAN SNDLYCTALC L

Best Arabidopsis Sequence Match ( AT1G50640.1 )
(BLAST)

001: MRRGRGSSAV AGPTVVAAIN GSVKEIRFRG VRKRPWGRFA AEIRDPWKKA RVWLGTFDSA EEAARAYDSA ARNLRGPKAK TNFPIDSSSP PPPNLRFNQI
101: RNQNQNQVDP FMDHRLFTDH QQQFPIVNRP TSSSMSSTVE SFSGPRPTTM KPATTKRYPR TPPVVPEDCH SDCDSSSSVI DDDDDIASSS RRRNPPFQFD
201: LNFPPLDCVD LFNGADDLHC TDLRL

Arabidopsis Description

ERF3Uncharacterized protein At1g50640 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV01]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.