Factsheet for PGSC0003DMT400037359

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400035608
PGSC0003DMT400076252

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50640.1	PGSC0003DMT400035608	AT2G45640.1	16429262
AT1G50640.1	PGSC0003DMT400076252	AT4G38130.1	16429262

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g006130.1.1	Tomato	mitochondrion, nucleus	95.52	96.38
PGSC0003DMT400057443	Potato	nucleus	80.72	75.0
GSMUA_Achr3P13010_001	Banana	nucleus	45.29	66.01
KRH14810	Soybean	nucleus	56.5	59.72
VIT_12s0059g01460.t01	Wine grape	nucleus	54.26	59.31
CDY37113	Canola	mitochondrion, nucleus	54.71	58.65
GSMUA_Achr4P06170_001	Banana	nucleus	47.98	57.84
KRH73332	Soybean	nucleus	55.61	57.67
Bra018864.1-P	Field mustard	nucleus	52.02	57.14
GSMUA_Achr4P04060_001	Banana	mitochondrion	40.36	56.96
AT1G50640.1	Thale cress	mitochondrion, nucleus	57.4	56.89
GSMUA_Achr1P18230_001	Banana	nucleus	48.43	56.84
CDY22810	Canola	nucleus	51.57	56.65
PGSC0003DMT400001820	Potato	nucleus	47.09	54.12
PGSC0003DMT400036071	Potato	nucleus	41.26	48.42
GSMUA_Achr4P11430_001	Banana	nucleus	34.08	46.34
PGSC0003DMT400076408	Potato	nucleus	30.94	45.1
PGSC0003DMT400068959	Potato	nucleus	34.08	33.93
PGSC0003DMT400058751	Potato	nucleus	31.39	30.97
PGSC0003DMT400033391	Potato	nucleus	31.39	30.43
PGSC0003DMT400056527	Potato	nucleus	20.18	28.12
PGSC0003DMT400035731	Potato	nucleus	36.32	27.27
PGSC0003DMT400005596	Potato	nucleus, plastid	19.28	21.94
PGSC0003DMT400008830	Potato	nucleus	24.22	21.26
PGSC0003DMT400011492	Potato	nucleus	24.22	21.26
PGSC0003DMT400005585	Potato	nucleus, plastid	22.87	17.59
PGSC0003DMT400047887	Potato	nucleus	27.35	15.64
PGSC0003DMT400058356	Potato	nucleus	21.97	14.37

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	ProteinID:AEM63545	ProteinID:AEM63545.1	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	EMBL:JN125859	UniProt:M1B5A1	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400014417	PGSC:PGSC0003DMG400014417
EnsemblPlants:PGSC0003DMT400037359	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31677	PANTHER:PTHR31677:SF17	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI0002961A99	SEG:seg	:	:	:

Description

Ethylene-responsive transcription factor 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400014417]

Coordinates

chr10:-:1121218..1122800

Molecular Weight (calculated)

24537.6 Da

IEP (calculated)

8.368

GRAVY (calculated)

-0.717

Length

223 amino acids

Sequence
(BLAST)

001: MRRGRATSAA AAAAVPVKPD GSGGLNEIRF RGVRKRPWGR FAAEIRDPWK KTRVWLGTFD SAEDAAKAYD TAARTLRGPK AKTNFPLPLY SQHHQFNQSL
101: NPNDRLVDPR LYSQEAPIVC QRPTSSGMSS TVESFSGPRP PRQQTAVLPS RKHPRSPPVE PDDCRSDCDS SSSVVEDGDC EGGNDNIVSS SFRNPLPFDL
201: NFPPPMDDVY ANSNDLYCTA LCL

Best Arabidopsis Sequence Match ( AT1G50640.1 )
(BLAST)

001: MRRGRGSSAV AGPTVVAAIN GSVKEIRFRG VRKRPWGRFA AEIRDPWKKA RVWLGTFDSA EEAARAYDSA ARNLRGPKAK TNFPIDSSSP PPPNLRFNQI
101: RNQNQNQVDP FMDHRLFTDH QQQFPIVNRP TSSSMSSTVE SFSGPRPTTM KPATTKRYPR TPPVVPEDCH SDCDSSSSVI DDDDDIASSS RRRNPPFQFD
201: LNFPPLDCVD LFNGADDLHC TDLRL

Arabidopsis Description

ERF3Uncharacterized protein At1g50640 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV01]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.