Factsheet for GSMUA_Achr4P04060_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P14440_001
GSMUA_Achr2P19590_001
GSMUA_Achr3P12560_001
GSMUA_Achr5P06320_001
GSMUA_Achr8P04190_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50640.1	GSMUA_Achr3P12560_001	AT2G45640.1	16429262
AT1G50640.1	GSMUA_Achr1P14440_001	AT4G38130.1	16429262
AT1G50640.1	GSMUA_Achr2P19590_001	AT4G38130.1	16429262
AT1G50640.1	GSMUA_Achr5P06320_001	AT4G38130.1	16429262
AT1G50640.1	GSMUA_Achr8P04190_001	AT4G38130.1	16429262
AT1G50640.1	GSMUA_AchrUn_...	AT4G38130.1	16429262

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P13010_001	Banana	nucleus	53.8	55.56
GSMUA_Achr4P06170_001	Banana	nucleus	63.29	54.05
GSMUA_AchrUn_...	Banana	nucleus	35.44	51.85
GSMUA_Achr1P18230_001	Banana	nucleus	62.03	51.58
GSMUA_Achr4P11430_001	Banana	nucleus	51.27	49.39
GSMUA_Achr7P00350_001	Banana	nucleus	33.54	48.18
CDY37113	Canola	mitochondrion, nucleus	61.39	46.63
Bra018864.1-P	Field mustard	nucleus	59.49	46.31
CDY22810	Canola	nucleus	59.49	46.31
KRH73332	Soybean	nucleus	61.39	45.12
KRH14810	Soybean	nucleus	58.86	44.08
AT1G50640.1	Thale cress	mitochondrion, nucleus	62.66	44.0
VIT_12s0059g01460.t01	Wine grape	nucleus	56.33	43.63
Solyc10g006130.1.1	Tomato	mitochondrion, nucleus	58.23	41.63
PGSC0003DMT400037359	Potato	mitochondrion, nucleus	56.96	40.36
Solyc07g064890.1.1	Tomato	nucleus	60.76	40.0
PGSC0003DMT400057443	Potato	nucleus	60.13	39.58
GSMUA_Achr7P03640_001	Banana	nucleus	39.87	37.95
GSMUA_Achr1P25890_001	Banana	nucleus	37.97	37.74
GSMUA_Achr3P29290_001	Banana	nucleus	37.34	37.11
GSMUA_Achr8P33590_001	Banana	nucleus	41.77	35.29
GSMUA_AchrUn_...	Banana	nucleus	39.24	35.03
GSMUA_Achr5P26850_001	Banana	nucleus	39.87	32.98
GSMUA_Achr8P15820_001	Banana	nucleus	34.81	32.35
GSMUA_Achr3P23710_001	Banana	nucleus	41.14	32.18
GSMUA_Achr8P06870_001	Banana	nucleus	37.34	31.89
GSMUA_Achr6P01440_001	Banana	nucleus	37.34	31.72
GSMUA_Achr8P15830_001	Banana	nucleus	39.87	31.66
GSMUA_Achr6P00240_001	Banana	nucleus	33.54	30.81
GSMUA_Achr4P06660_001	Banana	nucleus	37.34	30.73
GSMUA_Achr8P03550_001	Banana	nucleus	40.51	29.63
GSMUA_Achr9P11480_001	Banana	nucleus	41.77	29.2
GSMUA_Achr4P23620_001	Banana	nucleus	39.87	28.12
GSMUA_Achr6P00250_001	Banana	nucleus	41.77	27.62
GSMUA_Achr6P35320_001	Banana	nucleus	24.68	27.27
GSMUA_Achr4P33270_001	Banana	nucleus	44.94	26.69
GSMUA_Achr10P...	Banana	nucleus	35.44	25.23
GSMUA_Achr5P09940_001	Banana	mitochondrion	37.97	25.21
GSMUA_Achr7P17910_001	Banana	nucleus	24.05	23.46
GSMUA_Achr3P19420_001	Banana	nucleus	39.24	21.83
GSMUA_Achr3P02360_001	Banana	nucleus	32.91	19.33
GSMUA_Achr10P...	Banana	nucleus	31.65	19.16
GSMUA_Achr9P01870_001	Banana	nucleus	32.28	17.71
GSMUA_AchrUn_...	Banana	nucleus	29.75	16.79
GSMUA_Achr8P30180_001	Banana	nucleus	31.01	15.71

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr4G04060_001	EnsemblPlants:GSMUA_Achr4P04060_001
EnsemblPlants:GSMUA_Achr4T04060_001	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0SKX3	PFAM:PF00847	PIRSF:PIRSF038123
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31677	PANTHER:PTHR31677:SF17	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0002959E72	SEG:seg	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G04060_001]

Coordinates

chr4:+:3279967..3283232

Molecular Weight (calculated)

17283.6 Da

IEP (calculated)

11.123

GRAVY (calculated)

-0.741

Length

158 amino acids

Sequence
(BLAST)

001: MRKGRVPAAA AAVETRFRGV RKRPWGRFAA EIRDPWKKAR VWLGTFDSAE DAARAYDAAA CALRGPKAKT NFPLSTSSSP TPQHLPPFRP SATRFPLGHR
101: GHQPPPPTRP TSSSHSSTVE SCNGPRENDC HSDCGSSCSV EKKGPFKTLT PLKKMMML

Best Arabidopsis Sequence Match ( AT1G50640.1 )
(BLAST)

001: MRRGRGSSAV AGPTVVAAIN GSVKEIRFRG VRKRPWGRFA AEIRDPWKKA RVWLGTFDSA EEAARAYDSA ARNLRGPKAK TNFPIDSSSP PPPNLRFNQI
101: RNQNQNQVDP FMDHRLFTDH QQQFPIVNRP TSSSMSSTVE SFSGPRPTTM KPATTKRYPR TPPVVPEDCH SDCDSSSSVI DDDDDIASSS RRRNPPFQFD
201: LNFPPLDCVD LFNGADDLHC TDLRL

Arabidopsis Description

ERF3Uncharacterized protein At1g50640 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV01]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.