Factsheet for GSMUA_Achr8P04190_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plasma membrane

Predictor Summary:

cytosol 3
nucleus 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P12560_001
GSMUA_Achr5P27930_001	nucleus
GSMUA_Achr8P01750_001	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38130.1	GSMUA_Achr3P12560_001	AT2G45640.1	16429262
AT4G38130.1	GSMUA_Achr5P27930_001	AT4G32010.1	23362207
AT4G38130.1	GSMUA_Achr8P01750_001	AT4G32010.1	23362207
AT4G38130.1	GSMUA_Achr5P27930_001	AT4G32010.1	23362207
AT4G38130.1	GSMUA_Achr8P01750_001	AT4G32010.1	23362207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	68.21	74.62
Zm00001d016381_P001	Maize	nucleus	63.57	67.16
GSMUA_Achr1P14440_001	Banana	cytosol	63.11	65.38
GSMUA_Achr2P06520_001	Banana	cytosol	50.58	59.89
GSMUA_AchrUn_...	Banana	mitochondrion	50.12	59.67
GSMUA_Achr2P19590_001	Banana	nucleus	61.72	58.46
GSMUA_Achr5P06320_001	Banana	nucleus	62.65	58.19
VIT_03s0038g04240.t01	Wine grape	nucleus	67.75	58.17
VIT_14s0006g01820.t01	Wine grape	nucleus	67.52	57.97
Solyc09g091440.2.1	Tomato	nucleus	66.82	57.83
KRH77972	Soybean	nucleus	66.59	57.75
KRH60609	Soybean	nucleus	66.59	57.75
KRH51318	Soybean	nucleus	66.13	57.34
KRH27562	Soybean	nucleus	66.13	57.34
AT4G38130.1	Thale cress	nucleus	65.2	56.09
Bra040131.1-P	Field mustard	nucleus	65.2	55.98
CDY30008	Canola	nucleus	64.97	55.78
CDY21119	Canola	nucleus	64.97	55.78
KXG20269	Sorghum	nucleus	66.82	55.6
Zm00001d053595_P004	Maize	nucleus	66.36	55.32
EES04741	Sorghum	nucleus	66.36	55.32
Os06t0583400-01	Rice	nucleus	65.66	54.63
TraesCS6A01G184100.2	Wheat	nucleus	65.66	54.53
HORVU6Hr1G038710.1	Barley	cytosol	65.43	54.44
Zm00001d046388_P001	Maize	nucleus	67.05	54.43
TraesCS6B01G212600.3	Wheat	nucleus	65.66	54.42
HORVU7Hr1G085870.2	Barley	nucleus	64.97	53.95
TraesCS7D01G356800.1	Wheat	nucleus	64.73	53.76
TraesCS7B01G261800.1	Wheat	nucleus	64.73	53.76
PGSC0003DMT400076252	Potato	nucleus	66.82	53.73
TraesCS7A01G365600.3	Wheat	nucleus	64.73	53.35
Os02t0214900-01	Rice	cytoskeleton, cytosol, nucleus	63.11	53.33
Os02t0215200-02	Rice	cytoskeleton, cytosol, nucleus	62.65	53.05
Zm00001d014076_P001	Maize	cytosol, mitochondrion, nucleus	11.14	49.48
TraesCS6D01G171000.1	Wheat	golgi	65.66	49.3
GSMUA_Achr6P17260_001	Banana	plastid	49.88	44.79
Zm00001d018346_P001	Maize	mitochondrion	18.1	35.29
Zm00001d039202_P001	Maize	nucleus	13.23	34.34
GSMUA_Achr7P09060_001	Banana	mitochondrion	3.25	26.92
GSMUA_Achr10P...	Banana	plastid	20.42	20.05
GSMUA_Achr6P19520_001	Banana	cytosol	16.71	18.65
GSMUA_Achr7P09050_001	Banana	cytosol	11.6	17.79
GSMUA_AchrUn_...	Banana	cytosol	15.78	15.35
GSMUA_Achr4P03250_001	Banana	cytosol	22.74	14.76
GSMUA_Achr8P20260_001	Banana	nucleus	19.03	12.95

Protein Annotations

MapMan:12.3.2.1.1	Gene3D:3.40.800.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325
GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575
GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0046872	GO:GO:0070932	EnsemblPlantsGene:GSMUA_Achr8G04190_001
EnsemblPlants:GSMUA_Achr8P04190_001	EnsemblPlants:GSMUA_Achr8T04190_001	InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf
InterPro:IPR037138	UniProt:M0TMH2	PFAM:PF00850	PIRSF:PIRSF037913	PRINTS:PR01270	PANTHER:PTHR10625
PANTHER:PTHR10625:SF178	SUPFAM:SSF52768	TMHMM:TMhelix	UniParc:UPI0002951CF9	InterPro:Ureohydrolase_dom_sf	:

Description

Histone deacetylase 19 [Source:GMGC_GENE;Acc:GSMUA_Achr8G04190_001]

Coordinates

chr8:+:2830777..2833498

Molecular Weight (calculated)

48519.9 Da

IEP (calculated)

5.672

GRAVY (calculated)

-0.093

Length

431 amino acids

Sequence
(BLAST)

001: MEGAGGGNSL PSTSGADAVK RRVSYFYDPD VGNYYYGLGH PMKPHRIRMT HALLEKYGLL DRMKTLTNPC VARRFNITDD CPVFYRLFEF CQTYTGASVD
101: AAKELNRSNA DIVINWSGGL HHAKRSEASG FCYVNDIVLA ILKLLENHDR VLYVDIDIHH GDGVEEAFFT TDRVMTVSFH KFGEYFPGTG HLLDNGYGKG
201: KYYAVNVPLN DGIDDESYHY LFKPIIAKVM EVFNPDAVVL QCGADSLSGD RLGCFNLSVK GHAECVRYLR SFNVPLMLLG GGGYTLRNVA RCWCYETGVA
301: LHVEVNDKMP DHEYLGYYGP DYNIHVATSN MENKNSRKSL DDIKAKILDN LSKLQHAPSV QFQEWPTDTE LDEVLALFCL PLLSTCNLIW LENTKIFISI
401: MLSDAEFFDN VVAFFLGLMY SNISFLLVLD I

Best Arabidopsis Sequence Match ( AT4G38130.1 )
(BLAST)

001: MDTGGNSLAS GPDGVKRKVC YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ VLKPFPARDR DLCRFHADDY VSFLRSITPE TQQDQIRQLK
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY VDIDIHHGDG VEEAFYATDR
201: VMTVSFHKFG DYFPGTGHIQ DIGYGSGKYY SLNVPLDDGI DDESYHLLFK PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN
301: VPLLLLGGGG YTIRNVARCW CYETGVALGV EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN KNSRQMLEEI RNDLLHNLSK LQHAPSVPFQ ERPPDTETPE
401: VDEDQEDGDK RWDPDSDMDV DDDRKPIPSR VKREAVEPDT KDKDGLKGIM ERGKGCEVEV DESGSTKVTG VNPVGVEEAS VKMEEEGTNK GGAEQAFPPK
501: T

Arabidopsis Description

HDA19Histone deacetylase 19 [Source:UniProtKB/Swiss-Prot;Acc:O22446]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.