Factsheet for GSMUA_Achr6P19520_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19606	Sorghum	cytosol	75.13	74.36
Os05t0440250-01	Rice	cytosol, nucleus, plastid	75.39	74.23
TraesCS1B01G284500.1	Wheat	cytosol, nucleus, plastid	75.13	73.79
HORVU1Hr1G074110.1	Barley	cytosol	73.83	73.26
TraesCS1A01G275300.1	Wheat	cytosol, nucleus, plastid	73.32	72.38
TraesCS1D01G274900.1	Wheat	cytosol, nucleus, plastid	67.36	71.04
Os05t0440300-01	Rice	cytosol, nucleus, plastid	58.55	57.22
Zm00001d010162_P002	Maize	cytosol	58.55	40.14
Zm00001d010152_P002	Maize	cytosol	58.55	40.14
GSMUA_AchrUn_...	Banana	cytosol	25.13	21.9
GSMUA_Achr2P06520_001	Banana	cytosol	18.91	20.05
GSMUA_Achr1P14440_001	Banana	cytosol	21.24	19.71
GSMUA_AchrUn_...	Banana	mitochondrion	18.39	19.61
GSMUA_AchrUn_...	Banana	cytosol	19.43	19.04
GSMUA_Achr8P20260_001	Banana	nucleus	30.05	18.33
GSMUA_Achr6P17260_001	Banana	plastid	21.76	17.5
GSMUA_Achr8P04190_001	Banana	cytosol, nucleus, plasma membrane	18.65	16.71
GSMUA_Achr4P03250_001	Banana	cytosol	26.94	15.66
GSMUA_Achr2P19590_001	Banana	nucleus	18.13	15.38
GSMUA_Achr5P06320_001	Banana	nucleus	18.39	15.3
GSMUA_Achr7P09050_001	Banana	cytosol	10.36	14.23
GSMUA_Achr10P...	Banana	plastid	15.03	13.21
GSMUA_Achr7P09060_001	Banana	mitochondrion	1.55	11.54

Protein Annotations

MapMan:12.3.2.1.2	Gene3D:3.40.800.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351
GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041
GO:GO:0070932	EnsemblPlantsGene:GSMUA_Achr6G19520_001	EnsemblPlants:GSMUA_Achr6P19520_001	EnsemblPlants:GSMUA_Achr6T19520_001	InterPro:His_deacetylse	InterPro:His_deacetylse_dom
InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	UniProt:M0T8F0	PFAM:PF00850	PRINTS:PR01270	PANTHER:PTHR10625
PANTHER:PTHR10625:SF121	SUPFAM:SSF52768	UniParc:UPI000296BD38	InterPro:Ureohydrolase_dom_sf	SEG:seg	:

Description

Histone deacetylase 8 [Source:GMGC_GENE;Acc:GSMUA_Achr6G19520_001]

Coordinates

chr6:-:13819441..13823544

Molecular Weight (calculated)

41722.7 Da

IEP (calculated)

5.885

GRAVY (calculated)

-0.104

Length

386 amino acids

Sequence
(BLAST)

001: MDPQPPSPPL TAALPRDVIH VFWHEGMLDH DAGAGVFDTG FDPGFLEVLD KHPENADRVR NMVSILRKGP LAPFVSWHPG RPAHLSELFS FHTAEYVEEL
101: VQANVAGHKE LCPGTFMNPG SWGAALLAAG TTLSAMKYIL DGNGKLAYAL VRPPGHHAQP CRADGYCFLN NAGLAVQLAL DSGCRKAAVI DIDVHHGNGT
201: AEGFYRSDNV LTISLHMNHG SWGPSHPQNG SIDEVGEGSG FGYNLNIPLP NGTGDEGYAY AMNQLVVPAI QKFEPGLIVL VVGQDSSAFD PNGRQCLTMA
301: GYKKIGEVVR KLADMHSEGR ILVVQEGGYH VTYSAYCLHA TLEGVLNLPA PLLSDPIAYY PEDKAFTVKV VDSIKQYWKE CIPFLG

Best Arabidopsis Sequence Match ( AT1G08460.1 )
(BLAST)

001: MVTNRVDVFW HEGMLRHDAV EGVFDTGYDP GFLDVLEKHP ENADRVRNML SILRRGPIAP HVNWFTGLPA IVSELLMFHT SEYIEKLVEA DKSGERCEIA
101: AGTFMSPGSW EAALLAAGTT LSAMQHILDC HGKIAYALVR PPGHHSQPTQ ADGYCFLNNA ALAVKLALNS GSCSRVAVID IDVHYGNGTA EGFYTSDKVL
201: TVSLHMNHGS WGSSHPQKGS IDELGEDVGL GYNLNVPLPN GTGDRGYEYA MNELVVPAVR RFGPDMVVLV VGQDSSAFDP NGRQSLTMNG YRRIGQIMRG
301: VAEEHSHGRL LMVQEGGYHV TYAAYCLHAM LEGVLKIPEP HLSDPIAYYP EEEANAVAAV ESIKTYHTEF VPFLRGT

Arabidopsis Description

HDA8Histone deacetylase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q94EJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.