Factsheet for TraesCS1D01G274900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G275300.1
TraesCS1B01G284500.1
TraesCS1D01G274900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G08460.1	TraesCS1A01G275300.1	AT1G08460.1	21798944
AT1G08460.1	TraesCS1B01G284500.1	AT1G08460.1	21798944
AT1G08460.1	TraesCS1D01G274900.1	AT1G08460.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G275300.1	Wheat	cytosol, nucleus, plastid	95.63	89.51
TraesCS1B01G284500.1	Wheat	cytosol, nucleus, plastid	95.9	89.31
HORVU1Hr1G074110.1	Barley	cytosol	91.53	86.12
Os05t0440250-01	Rice	cytosol, nucleus, plastid	87.43	81.63
EES19606	Sorghum	cytosol	85.52	80.26
VIT_06s0080g00210.t01	Wine grape	nucleus	65.03	68.39
GSMUA_Achr6P19520_001	Banana	cytosol	71.04	67.36
Solyc06g074080.2.1	Tomato	cytosol	67.76	64.42
PGSC0003DMT400015085	Potato	cytoskeleton, cytosol, nucleus	66.12	63.85
AT1G08460.1	Thale cress	cytosol	64.21	62.33
CDY22682	Canola	cytosol	64.21	60.88
Bra031628.1-P	Field mustard	cytosol	64.21	60.88
KRH26679	Soybean	cytosol	63.11	60.63
CDY06315	Canola	cytosol	63.39	60.1
Os05t0440300-01	Rice	cytosol, nucleus, plastid	61.2	56.71
Zm00001d010152_P002	Maize	cytosol	63.93	41.56
Zm00001d010162_P002	Maize	cytosol	63.93	41.56
TraesCS3D01G422300.1	Wheat	cytosol	19.4	21.71
TraesCS1D01G317100.1	Wheat	mitochondrion	21.58	20.05
TraesCS5D01G126600.1	Wheat	mitochondrion, plastid, vacuole	20.77	17.12
TraesCS2D01G291000.1	Wheat	cytosol	19.4	16.51
TraesCS6D01G168400.1	Wheat	cytosol	20.49	16.38
TraesCS4D01G100000.1	Wheat	cytosol	20.77	16.14
TraesCS5D01G076100.1	Wheat	nucleus	25.68	15.36
TraesCS7D01G360500.1	Wheat	plastid	14.21	14.73
TraesCS7D01G356800.1	Wheat	nucleus	20.77	14.64
TraesCS5D01G302400.1	Wheat	cytosol	19.4	14.34
TraesCS6D01G171000.1	Wheat	golgi	21.86	13.94
TraesCS2D01G185200.1	Wheat	cytosol, golgi	24.86	13.13

Protein Annotations

EnsemblPlants:TraesCS1D01G274900.1	EnsemblPlantsGene:TraesCS1D01G274900	Gene3D:3.40.800.20	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf
InterPro:IPR037138	InterPro:Ureohydrolase_dom_sf	PANTHER:PTHR10625	PANTHER:PTHR10625:SF121	PFAM:PF00850	SEG:seg
SUPFAM:SSF52768	MapMan:12.3.2.1.2	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:370350482..370352636

Molecular Weight (calculated)

39479.7 Da

IEP (calculated)

5.323

GRAVY (calculated)

-0.196

Length

366 amino acids

Sequence
(BLAST)

001: MDSSSSSVPA AAAAEGAPPA GENLAVFWHE GMLAHDAGRG VFDSGRDPGF LDVLDHHPEN ADRVRNMVSI LRRGPIAPFL SWHSGTPAHA SDLLSFHSPE
101: YIEELAQANA SGPKKLCEGT FLNPGSWGAA LLAAGTTLSA TRHILDGHGK IAYALLALDS GRAKVAVVDI DVHYGNGTAE GFYCTDNVLT ISLHMKHGTW
201: GPSHPQSGSS DEIGEGKGLG YNLNIPLPNG SGDKGYEYAM NELVVPAIDK FQPQLLVFVI GQDSSMFDPN GRQCLTMDGY RKIAQLMRGV ANRHSDGQML
301: IVQEGGYHIS YSAYCLHATL EGVLNLEAPL LDDPIAYYPE DEKYTMKVVD VMKKCWKESI PFLKDI

Best Arabidopsis Sequence Match ( AT1G08460.1 )
(BLAST)

001: MVTNRVDVFW HEGMLRHDAV EGVFDTGYDP GFLDVLEKHP ENADRVRNML SILRRGPIAP HVNWFTGLPA IVSELLMFHT SEYIEKLVEA DKSGERCEIA
101: AGTFMSPGSW EAALLAAGTT LSAMQHILDC HGKIAYALVR PPGHHSQPTQ ADGYCFLNNA ALAVKLALNS GSCSRVAVID IDVHYGNGTA EGFYTSDKVL
201: TVSLHMNHGS WGSSHPQKGS IDELGEDVGL GYNLNVPLPN GTGDRGYEYA MNELVVPAVR RFGPDMVVLV VGQDSSAFDP NGRQSLTMNG YRRIGQIMRG
301: VAEEHSHGRL LMVQEGGYHV TYAAYCLHAM LEGVLKIPEP HLSDPIAYYP EEEANAVAAV ESIKTYHTEF VPFLRGT

Arabidopsis Description

HDA8Histone deacetylase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q94EJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.