Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G318000.1 | Wheat | cytoskeleton, cytosol, nucleus | 60.55 | 52.11 |
| TraesCS1D01G317100.1 | Wheat | mitochondrion | 35.78 | 29.7 |
| TraesCS5D01G126600.1 | Wheat | mitochondrion, plastid, vacuole | 28.13 | 20.72 |
| TraesCS1D01G274900.1 | Wheat | cytosol, nucleus, plastid | 21.71 | 19.4 |
| TraesCS2D01G185200.1 | Wheat | cytosol, golgi | 35.17 | 16.59 |
| TraesCS5D01G076100.1 | Wheat | nucleus | 29.97 | 16.01 |
| TraesCS4D01G100000.1 | Wheat | cytosol | 22.02 | 15.29 |
| TraesCS2D01G291000.1 | Wheat | cytosol | 19.57 | 14.88 |
| TraesCS6D01G168400.1 | Wheat | cytosol | 20.8 | 14.85 |
| TraesCS7D01G360500.1 | Wheat | plastid | 15.6 | 14.45 |
| TraesCS5D01G302400.1 | Wheat | cytosol | 21.1 | 13.94 |
| TraesCS7D01G356800.1 | Wheat | nucleus | 21.41 | 13.49 |
| TraesCS6D01G171000.1 | Wheat | golgi | 21.71 | 12.37 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G422300.1 | EnsemblPlantsGene:TraesCS3D01G422300 | Gene3D:3.40.800.20 | InterPro:His_deacetylse | InterPro:His_deacetylse_dom | InterPro:His_deacetylse_dom_sf |
| InterPro:IPR037138 | InterPro:Ureohydrolase_dom_sf | PANTHER:PTHR10625 | PANTHER:PTHR10625:SF177 | PFAM:PF00850 | PRINTS:PR01270 |
| SUPFAM:SSF52768 | TIGR:cd09992 | MapMan:12.3.2.1.2 | : | : | : |
Description
No Description!
Coordinates
chr3D:+:534235224..534237524
Molecular Weight (calculated)
35839.3 Da
IEP (calculated)
4.966
GRAVY (calculated)
-0.109
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTLNQDGVL DRTEREPFDS ADREIILAVN DPEQLDYVDA LPMTDEEQDA KFSQVAGVSV FSSEGTTEAI YSAAGAVIRG SDLVVEEYYE TAFAIIRPPG
101: HHAHKISEGF CFLNNVAIAT QHVVDHHHIE RALVVDFDVH HGNGTQELFY GSKQVLFFST HRRDLSYPAS KSSVNDIGDG VGLGYNINVP LKKGFNDVDM
201: LYVCDQLLGP VATAFKPEVV FVSAGYDAGE GETIGGCNVS AKGFGTIVRK LLPLSGGKMV LALEGGYNLV HLPICVSHTI RAILGDEDAF LQDSDYRDKL
301: PFKSTIRTVN TIKHNLRLCW DVFKAKS
101: HHAHKISEGF CFLNNVAIAT QHVVDHHHIE RALVVDFDVH HGNGTQELFY GSKQVLFFST HRRDLSYPAS KSSVNDIGDG VGLGYNINVP LKKGFNDVDM
201: LYVCDQLLGP VATAFKPEVV FVSAGYDAGE GETIGGCNVS AKGFGTIVRK LLPLSGGKMV LALEGGYNLV HLPICVSHTI RAILGDEDAF LQDSDYRDKL
301: PFKSTIRTVN TIKHNLRLCW DVFKAKS
001: MAMAGESSGK KIGDCDGKVA GNRQRKVGLI YDETMCKHDT PDGEDHPECP DRIRVIWEKL QLAGVSQRCV VLGSSKAEDK HLQLVHTKDH VNLVKSISTK
101: QKDYRRNRIA SQLNSIYLNG GSSEAAYLAA GSVVKLAEKV AEGELDCGFA IVRPPGHHAE ADEAMGFCLF NNVAVAASFL LNERPDLGVK KILIVDWDVH
201: HGNGTQKMFW KDPRVLFFSV HRHEYGGFYP AGDDGDYNMV GEGPGEGFNI NVPWDQGRCG DADYLAAWDH ILIPVAREFN PDVIFLSAGF DAAINDPLGG
301: CCVTPYGYSV MLKKLMEFAQ GKIVLALEGG YNLDSIAKSS LACVQVLLED KQIQGPPEAY PFESTWRVIQ AVRKRLCTYW PSLADELSWK LINQKTPTPI
401: ILISSSDSET EDNAQGLLDQ MSKLSIENPQ GTLLENHQVE PASTSWRADL AKVDVWYASF GSNMWKPRFL CYIQGGQVDG LKKVCVGSMD KSPPKETVWE
501: TFPHRLFFGR ESSVGWGVGG VAFTNPLANL IDQTHMCLYR ITLEQFNDVL SQENGLNVDS DSPVFDLAAL QLVDNKGSIL EAPLNSWYGN VVCLGKERDI
601: PILTMTCTLS AVEKFKSGEI PIRPPAKAYA NTLIRGLVEG GRLSKEEAEA YIDKAVSKPL
101: QKDYRRNRIA SQLNSIYLNG GSSEAAYLAA GSVVKLAEKV AEGELDCGFA IVRPPGHHAE ADEAMGFCLF NNVAVAASFL LNERPDLGVK KILIVDWDVH
201: HGNGTQKMFW KDPRVLFFSV HRHEYGGFYP AGDDGDYNMV GEGPGEGFNI NVPWDQGRCG DADYLAAWDH ILIPVAREFN PDVIFLSAGF DAAINDPLGG
301: CCVTPYGYSV MLKKLMEFAQ GKIVLALEGG YNLDSIAKSS LACVQVLLED KQIQGPPEAY PFESTWRVIQ AVRKRLCTYW PSLADELSWK LINQKTPTPI
401: ILISSSDSET EDNAQGLLDQ MSKLSIENPQ GTLLENHQVE PASTSWRADL AKVDVWYASF GSNMWKPRFL CYIQGGQVDG LKKVCVGSMD KSPPKETVWE
501: TFPHRLFFGR ESSVGWGVGG VAFTNPLANL IDQTHMCLYR ITLEQFNDVL SQENGLNVDS DSPVFDLAAL QLVDNKGSIL EAPLNSWYGN VVCLGKERDI
601: PILTMTCTLS AVEKFKSGEI PIRPPAKAYA NTLIRGLVEG GRLSKEEAEA YIDKAVSKPL
Arabidopsis Description
HDA05Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4K1Z5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.