Factsheet for PGSC0003DMT400015085

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015085

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G08460.1	PGSC0003DMT400015085	AT1G08460.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g074080.2.1	Tomato	cytosol	93.14	91.69
VIT_06s0080g00210.t01	Wine grape	nucleus	73.61	80.17
KRH26679	Soybean	cytosol	75.73	75.33
EES19606	Sorghum	cytosol	70.45	68.46
AT1G08460.1	Thale cress	cytosol	68.07	68.44
Bra031628.1-P	Field mustard	cytosol	69.66	68.39
HORVU1Hr1G074110.1	Barley	cytosol	69.92	68.12
CDY22682	Canola	cytosol	69.13	67.88
TraesCS1B01G284500.1	Wheat	cytosol, nucleus, plastid	69.92	67.43
CDY06315	Canola	cytosol	68.6	67.36
TraesCS1A01G275300.1	Wheat	cytosol, nucleus, plastid	69.39	67.26
TraesCS1D01G274900.1	Wheat	cytosol, nucleus, plastid	63.85	66.12
Zm00001d010162_P002	Maize	cytosol	55.67	37.48
Zm00001d010152_P002	Maize	cytosol	55.67	37.48
PGSC0003DMT400068240	Potato	cytosol	21.11	20.15
PGSC0003DMT400014582	Potato	nucleus	29.55	18.36
PGSC0003DMT400046818	Potato	cytosol	21.11	17.54
PGSC0003DMT400076991	Potato	cytosol	15.57	16.67
PGSC0003DMT400069419	Potato	nucleus	20.32	16.35
PGSC0003DMT400076252	Potato	nucleus	21.9	15.49
GSMUA_Achr7P09050_001	Banana	cytosol	11.08	14.95
GSMUA_Achr7P09060_001	Banana	mitochondrion	1.06	7.69
Os05t0440100-02	Rice	cytosol	2.37	3.28

Protein Annotations

EnsemblPlants:PGSC0003DMT400015085	EnsemblPlantsGene:PGSC0003DMG400005895	EntrezGene:102605249	Gene3D:3.40.800.20	GO:GO:0003674	GO:GO:0003824
GO:GO:0016787	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	InterPro:Ureohydrolase_dom_sf
PANTHER:PTHR10625	PANTHER:PTHR10625:SF121	PFAM:PF00850	PGSC:PGSC0003DMG400005895	PRINTS:PR01270	RefSeq:XP_006361095.1
SEG:seg	SUPFAM:SSF52768	UniParc:UPI00029587F8	UniProt:M1A5F0	MapMan:12.3.2.1.2	:

Description

Histone deacetylase superfamily [Source:PGSC_GENE;Acc:PGSC0003DMG400005895]

Coordinates

chr6:-:54660358..54663473

Molecular Weight (calculated)

41286.9 Da

IEP (calculated)

5.845

GRAVY (calculated)

-0.250

Length

379 amino acids

Sequence
(BLAST)

001: MASSASQSLP SDNLIHVFWD EGMLKHDTGR GVFDTGIDPG FLDVLEKHPE NSDRVKNMLS ILKRGPISPF ISWHHGRPAH ISELSSFHTQ EYVNELIEAD
101: RNGGKELCGG TFLNPGSWDA ALLAAGSTLS AMKHIIDGHG KITYALVRPP GHHAQPTQAD GYCFLNNAGL AVQLALDGGC RKVVVLDIDV HYGNGTAEGF
201: YHSDKVLTIS LHMNHGSWGP SHPQGGTVEE LGEGEGFGYN LNIPLPNGTG DKGYGYAMQH LVVPAIEKFE PDMMVLVVGQ DSSAFDPNGR QCLTMEGYRE
301: IGRTIRGMAN KYSNGRLLIV QEGGYHVTYS AYCLHATLEG VLNVSDPLLS DPIAYYPEDQ SFPTKVIEAI KDHFLKMIS

Best Arabidopsis Sequence Match ( AT1G08460.1 )
(BLAST)

001: MVTNRVDVFW HEGMLRHDAV EGVFDTGYDP GFLDVLEKHP ENADRVRNML SILRRGPIAP HVNWFTGLPA IVSELLMFHT SEYIEKLVEA DKSGERCEIA
101: AGTFMSPGSW EAALLAAGTT LSAMQHILDC HGKIAYALVR PPGHHSQPTQ ADGYCFLNNA ALAVKLALNS GSCSRVAVID IDVHYGNGTA EGFYTSDKVL
201: TVSLHMNHGS WGSSHPQKGS IDELGEDVGL GYNLNVPLPN GTGDRGYEYA MNELVVPAVR RFGPDMVVLV VGQDSSAFDP NGRQSLTMNG YRRIGQIMRG
301: VAEEHSHGRL LMVQEGGYHV TYAAYCLHAM LEGVLKIPEP HLSDPIAYYP EEEANAVAAV ESIKTYHTEF VPFLRGT

Arabidopsis Description

HDA8Histone deacetylase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q94EJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.