Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- nucleus 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc11g067020.1.1 | Tomato | cytosol | 99.5 | 91.86 |
VIT_15s0021g00610.t01 | Wine grape | cytosol | 89.17 | 82.33 |
AT3G44680.1 | Thale cress | cytosol | 87.41 | 81.46 |
KRH25183 | Soybean | cytosol | 87.66 | 81.12 |
KRH30495 | Soybean | cytosol | 87.66 | 81.12 |
VIT_06s0061g01510.t01 | Wine grape | cytosol, mitochondrion, nucleus | 87.66 | 80.93 |
CDX99186 | Canola | cytosol | 86.15 | 80.28 |
Bra019424.1-P | Field mustard | cytosol | 86.15 | 80.28 |
EES10729 | Sorghum | cytosol | 85.64 | 79.07 |
CDY08684 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 79.85 | 79.05 |
TraesCS2A01G293200.1 | Wheat | cytosol | 84.89 | 78.37 |
TraesCS2D01G291000.1 | Wheat | cytosol | 84.63 | 78.14 |
TraesCS2B01G309700.1 | Wheat | cytosol | 84.38 | 77.91 |
Zm00001d003813_P001 | Maize | cytosol | 83.63 | 74.27 |
GSMUA_Achr6P17260_001 | Banana | plastid | 84.63 | 70.0 |
HORVU2Hr1G072570.5 | Barley | plastid | 47.1 | 66.55 |
HORVU2Hr1G072600.1 | Barley | endoplasmic reticulum | 41.31 | 66.13 |
Os04t0409600-01 | Rice | cytosol | 30.48 | 64.36 |
AT3G44490.1 | Thale cress | cytosol | 25.19 | 63.29 |
AT3G44660.1 | Thale cress | cytoskeleton, cytosol, nucleus | 21.66 | 60.56 |
PGSC0003DMT400046818 | Potato | cytosol | 53.9 | 46.93 |
PGSC0003DMT400069419 | Potato | nucleus | 55.16 | 46.5 |
PGSC0003DMT400076252 | Potato | nucleus | 57.68 | 42.72 |
PGSC0003DMT400076991 | Potato | cytosol | 20.15 | 22.6 |
PGSC0003DMT400015085 | Potato | cytoskeleton, cytosol, nucleus | 20.15 | 21.11 |
PGSC0003DMT400014582 | Potato | nucleus | 20.15 | 13.11 |
Protein Annotations
MapMan:12.3.2.1.1 | MapMan:12.3.2.1.4.1 | Gene3D:3.40.800.20 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004407 |
GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
GO:GO:0006325 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016569 | GO:GO:0016575 | GO:GO:0016787 |
GO:GO:0019538 | GO:GO:0032041 | GO:GO:0046872 | GO:GO:0070932 | InterPro:His_deacetylse | InterPro:His_deacetylse_1 |
InterPro:His_deacetylse_dom | InterPro:His_deacetylse_dom_sf | InterPro:IPR037138 | UniProt:M1CIN9 | PFAM:PF00850 | EnsemblPlantsGene:PGSC0003DMG400026529 |
PGSC:PGSC0003DMG400026529 | EnsemblPlants:PGSC0003DMT400068240 | PIRSF:PIRSF037913 | PRINTS:PR01270 | PRINTS:PR01271 | PANTHER:PTHR10625 |
PANTHER:PTHR10625:SF171 | SUPFAM:SSF52768 | UniParc:UPI000296F68C | InterPro:Ureohydrolase_dom_sf | SEG:seg | : |
Description
Histone deacetylase [Source:PGSC_GENE;Acc:PGSC0003DMG400026529]
Coordinates
chr11:+:39885466..39898078
Molecular Weight (calculated)
45081.0 Da
IEP (calculated)
4.989
GRAVY (calculated)
-0.407
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLVLA YGLHSKMEVY RPHKAYPVEL AQFHSADYVE FLNRITPETQ NLFPSEMARY NLGEDCPVFD
101: NLFEFCQIYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CAASGFCYIN DLVLGILELL KYHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKYGDK
201: FFPGTGDMKD TGERDGRFYS INVPLKDGID DGSFTRLFKT IISKVVETYL PGAIVLQCGA DSLAGDRLGC FNLSIDGHAE CVRFVKKFNL PLLVTGGGGY
301: TKENVARCWA LETGVLLDTE LPNEIPDNDY IKYFAPDYSL KLPGGHIVPP DFFIPDFDED EQNPDERVNQ HTQDKHIQRD DEYYEGDHDN DNHTDDA
101: NLFEFCQIYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CAASGFCYIN DLVLGILELL KYHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKYGDK
201: FFPGTGDMKD TGERDGRFYS INVPLKDGID DGSFTRLFKT IISKVVETYL PGAIVLQCGA DSLAGDRLGC FNLSIDGHAE CVRFVKKFNL PLLVTGGGGY
301: TKENVARCWA LETGVLLDTE LPNEIPDNDY IKYFAPDYSL KLPGGHIVPP DFFIPDFDED EQNPDERVNQ HTQDKHIQRD DEYYEGDHDN DNHTDDA
001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS
Arabidopsis Description
HDA9Histone deacetylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.