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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • nucleus 3
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc11g067020.1.1 Tomato cytosol 99.5 91.86
VIT_15s0021g00610.t01 Wine grape cytosol 89.17 82.33
AT3G44680.1 Thale cress cytosol 87.41 81.46
KRH25183 Soybean cytosol 87.66 81.12
KRH30495 Soybean cytosol 87.66 81.12
VIT_06s0061g01510.t01 Wine grape cytosol, mitochondrion, nucleus 87.66 80.93
CDX99186 Canola cytosol 86.15 80.28
Bra019424.1-P Field mustard cytosol 86.15 80.28
EES10729 Sorghum cytosol 85.64 79.07
CDY08684 Canola cytosol, mitochondrion, nucleus, peroxisome 79.85 79.05
TraesCS2A01G293200.1 Wheat cytosol 84.89 78.37
TraesCS2D01G291000.1 Wheat cytosol 84.63 78.14
TraesCS2B01G309700.1 Wheat cytosol 84.38 77.91
Zm00001d003813_P001 Maize cytosol 83.63 74.27
GSMUA_Achr6P17260_001 Banana plastid 84.63 70.0
HORVU2Hr1G072570.5 Barley plastid 47.1 66.55
HORVU2Hr1G072600.1 Barley endoplasmic reticulum 41.31 66.13
Os04t0409600-01 Rice cytosol 30.48 64.36
AT3G44490.1 Thale cress cytosol 25.19 63.29
AT3G44660.1 Thale cress cytoskeleton, cytosol, nucleus 21.66 60.56
PGSC0003DMT400046818 Potato cytosol 53.9 46.93
PGSC0003DMT400069419 Potato nucleus 55.16 46.5
PGSC0003DMT400076252 Potato nucleus 57.68 42.72
PGSC0003DMT400076991 Potato cytosol 20.15 22.6
PGSC0003DMT400015085 Potato cytoskeleton, cytosol, nucleus 20.15 21.11
PGSC0003DMT400014582 Potato nucleus 20.15 13.11
Protein Annotations
MapMan:12.3.2.1.1MapMan:12.3.2.1.4.1Gene3D:3.40.800.20GO:GO:0003674GO:GO:0003824GO:GO:0004407
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139
GO:GO:0006325GO:GO:0006351GO:GO:0006355GO:GO:0006464GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0016043GO:GO:0016569GO:GO:0016575GO:GO:0016787
GO:GO:0019538GO:GO:0032041GO:GO:0046872GO:GO:0070932InterPro:His_deacetylseInterPro:His_deacetylse_1
InterPro:His_deacetylse_domInterPro:His_deacetylse_dom_sfInterPro:IPR037138UniProt:M1CIN9PFAM:PF00850EnsemblPlantsGene:PGSC0003DMG400026529
PGSC:PGSC0003DMG400026529EnsemblPlants:PGSC0003DMT400068240PIRSF:PIRSF037913PRINTS:PR01270PRINTS:PR01271PANTHER:PTHR10625
PANTHER:PTHR10625:SF171SUPFAM:SSF52768UniParc:UPI000296F68CInterPro:Ureohydrolase_dom_sfSEG:seg:
Description
Histone deacetylase [Source:PGSC_GENE;Acc:PGSC0003DMG400026529]
Coordinates
chr11:+:39885466..39898078
Molecular Weight (calculated)
45081.0 Da
IEP (calculated)
4.989
GRAVY (calculated)
-0.407
Length
397 amino acids
Sequence
(BLAST)
001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLVLA YGLHSKMEVY RPHKAYPVEL AQFHSADYVE FLNRITPETQ NLFPSEMARY NLGEDCPVFD
101: NLFEFCQIYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CAASGFCYIN DLVLGILELL KYHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKYGDK
201: FFPGTGDMKD TGERDGRFYS INVPLKDGID DGSFTRLFKT IISKVVETYL PGAIVLQCGA DSLAGDRLGC FNLSIDGHAE CVRFVKKFNL PLLVTGGGGY
301: TKENVARCWA LETGVLLDTE LPNEIPDNDY IKYFAPDYSL KLPGGHIVPP DFFIPDFDED EQNPDERVNQ HTQDKHIQRD DEYYEGDHDN DNHTDDA
Best Arabidopsis Sequence Match ( AT3G44680.1 )
(BLAST)
001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS
Arabidopsis Description
HDA9Histone deacetylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.