Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 2
- golgi 2
- extracellular 2
- plastid 1
- cytosol 2
- vacuole 1
- plasma membrane 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G44660.1 | Thale cress | cytoskeleton, cytosol, nucleus | 89.24 | 99.3 |
| HORVU2Hr1G072600.1 | Barley | endoplasmic reticulum | 73.42 | 46.77 |
| CDY08684 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 90.51 | 35.66 |
| AT3G44680.1 | Thale cress | cytosol | 95.57 | 35.45 |
| Bra019424.1-P | Field mustard | cytosol | 90.51 | 33.57 |
| CDX99186 | Canola | cytosol | 90.51 | 33.57 |
| VIT_15s0021g00610.t01 | Wine grape | cytosol | 82.91 | 30.47 |
| KRH30495 | Soybean | cytosol | 82.28 | 30.3 |
| KRH25183 | Soybean | cytosol | 81.01 | 29.84 |
| VIT_06s0061g01510.t01 | Wine grape | cytosol, mitochondrion, nucleus | 81.01 | 29.77 |
| Solyc11g067020.1.1 | Tomato | cytosol | 79.75 | 29.3 |
| EES10729 | Sorghum | cytosol | 75.32 | 27.67 |
| Zm00001d003813_P001 | Maize | cytosol | 75.95 | 26.85 |
| TraesCS2A01G293200.1 | Wheat | cytosol | 72.78 | 26.74 |
| TraesCS2B01G309700.1 | Wheat | cytosol | 72.78 | 26.74 |
| TraesCS2D01G291000.1 | Wheat | cytosol | 72.78 | 26.74 |
| GSMUA_Achr6P17260_001 | Banana | plastid | 80.38 | 26.46 |
| PGSC0003DMT400068240 | Potato | cytosol | 63.29 | 25.19 |
| AT4G38130.1 | Thale cress | nucleus | 43.67 | 13.77 |
| AT5G35600.1 | Thale cress | cytosol | 34.81 | 13.45 |
| AT5G63110.1 | Thale cress | nucleus | 36.08 | 12.1 |
| AT5G26040.2 | Thale cress | endoplasmic reticulum | 7.59 | 3.1 |
| AT5G61060.2 | Thale cress | cytosol | 12.66 | 3.01 |
| AT3G18520.2 | Thale cress | cytosol | 9.49 | 2.66 |
| AT1G08460.1 | Thale cress | cytosol | 6.33 | 2.65 |
| AT4G33470.1 | Thale cress | plastid | 6.33 | 2.36 |
| AT5G61070.1 | Thale cress | cytosol | 8.23 | 1.91 |
| HORVU2Hr1G072570.5 | Barley | plastid | 0.63 | 0.36 |
| Os04t0409600-01 | Rice | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:12.3.2.1.1 | Gene3D:3.40.800.20 | EntrezGene:823574 | ProteinID:AEE77907.1 | ArrayExpress:AT3G44490 | EnsemblPlantsGene:AT3G44490 |
| RefSeq:AT3G44490 | TAIR:AT3G44490 | RefSeq:AT3G44490-TAIR-G | EnsemblPlants:AT3G44490.1 | TAIR:AT3G44490.1 | Unigene:At.66492 |
| EMBL:BT014712 | ProteinID:CAB88531.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004407 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006325 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016569 | GO:GO:0016575 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0032041 |
| GO:GO:0070932 | InterPro:His_deacetylse | InterPro:His_deacetylse_dom_sf | InterPro:IPR037138 | RefSeq:NP_190035.1 | PANTHER:PTHR10625 |
| PANTHER:PTHR10625:SF171 | UniProt:Q9LXN8 | SUPFAM:SSF52768 | UniParc:UPI000009C7B8 | InterPro:Ureohydrolase_dom_sf | Symbol:hda17 |
| SEG:seg | : | : | : | : | : |
Description
HDA17Histone deacetylase 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXN8]
Coordinates
chr3:+:16097479..16098599
Molecular Weight (calculated)
18117.1 Da
IEP (calculated)
4.255
GRAVY (calculated)
-0.587
Length
158 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFSMLFTGH AECVKFVKKF NLPLLVTGGG GYTKENVARC WTVETGILLD TELPNEISEN DYIKYFAPDF SLKIPGGHIE NLNTKSYISS IKVQILENLR
101: YIQHAPSVQM QEVPPDFYIP DFDEDEQNPD VRVDQRSRDK QIQRDDEYFD GDNDNDAS
101: YIQHAPSVQM QEVPPDFYIP DFDEDEQNPD VRVDQRSRDK QIQRDDEYFD GDNDNDAS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.