Factsheet for VIT_15s0021g00610.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0061g01510.t01	Wine grape	cytosol, mitochondrion, nucleus	96.98	96.98
KRH25183	Soybean	cytosol	91.4	91.61
KRH30495	Soybean	cytosol	91.16	91.38
Solyc11g067020.1.1	Tomato	cytosol	90.0	90.0
PGSC0003DMT400068240	Potato	cytosol	82.33	89.17
AT3G44680.1	Thale cress	cytosol	86.98	87.79
EES10729	Sorghum	cytosol	86.28	86.28
Bra019424.1-P	Field mustard	cytosol	85.35	86.15
CDX99186	Canola	cytosol	85.35	86.15
TraesCS2D01G291000.1	Wheat	cytosol	85.58	85.58
TraesCS2B01G309700.1	Wheat	cytosol	85.58	85.58
CDY08684	Canola	cytosol, mitochondrion, nucleus, peroxisome	79.77	85.54
TraesCS2A01G293200.1	Wheat	cytosol	85.12	85.12
AT3G44490.1	Thale cress	cytosol	30.47	82.91
AT3G44660.1	Thale cress	cytoskeleton, cytosol, nucleus	27.21	82.39
Zm00001d003813_P001	Maize	cytosol	84.19	80.98
GSMUA_Achr6P17260_001	Banana	plastid	89.3	80.0
HORVU2Hr1G072600.1	Barley	endoplasmic reticulum	44.19	76.61
HORVU2Hr1G072570.5	Barley	plastid	45.12	69.04
Os04t0409600-01	Rice	cytosol	29.77	68.09
VIT_17s0000g09070.t01	Wine grape	cytosol	54.42	50.43
VIT_14s0006g01820.t01	Wine grape	nucleus	57.91	49.6
VIT_03s0038g04240.t01	Wine grape	nucleus	57.21	49.0
VIT_06s0080g00210.t01	Wine grape	nucleus	17.91	22.13
VIT_04s0008g00910.t01	Wine grape	plastid	18.37	22.01
VIT_04s0044g01510.t01	Wine grape	mitochondrion	16.05	15.79
VIT_17s0000g07280.t01	Wine grape	cytosol	20.93	13.93
VIT_17s0000g04120.t01	Wine grape	nucleus	19.77	12.2
VIT_13s0106g00170.t01	Wine grape	cytosol, golgi, plastid	9.07	11.57

Protein Annotations

EntrezGene:100240976	wikigene:100240976	MapMan:12.3.2.1.1	MapMan:12.3.2.1.4.1	Gene3D:3.40.800.20	EMBL:AM423665
ProteinID:CAN77816	ProteinID:CAN77816.1	ProteinID:CBI16725	ProteinID:CBI16725.3	UniProt:D7SM47	EMBL:FN594952
GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0046872
GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138
EntrezGene:LOC100240976	wikigene:LOC100240976	PFAM:PF00850	PIRSF:PIRSF037913	PRINTS:PR01270	PRINTS:PR01271
PANTHER:PTHR10625	PANTHER:PTHR10625:SF171	SUPFAM:SSF52768	UniParc:UPI00015C954C	InterPro:Ureohydrolase_dom_sf	ArrayExpress:VIT_15s0021g00610
EnsemblPlantsGene:VIT_15s0021g00610	EnsemblPlants:VIT_15s0021g00610.t01	unigene:Vvi.2985	RefSeq:XP_002266492	RefSeq:XP_002266492.1	SEG:seg

Description

Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:D7SM47]

Coordinates

chr15:-:10328981..10349851

Molecular Weight (calculated)

49316.2 Da

IEP (calculated)

5.042

GRAVY (calculated)

-0.447

Length

430 amino acids

Sequence
(BLAST)

001: MRSKDRISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLVLS YELHKKMEIY RPHKAYPVEL AQFHSADYVE FLHRITPDTQ HLFSNELARY NLGEDCPVFE
101: NLFEFCQIYA GGTIDAARRL NNQLCDIAIN WAGGLHHAKK CEASGFCYIN DLVLGILELL KHHARVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKYGDK
201: FFPGTGDVKE TGEREGKFYA INVPLKDGID DTSFTRLFKT IIAKVVETYQ PGVIVLQCGA DSLAGDRLGC FNLSIDGHAE CVRFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGVLLDTE LPNEIPENEY IKYFAPEYSL KIPNGHIENL NSKSYIGTIK MQVLENLRCI QHAPSVQMQE VPPDFYIPDF DEDEQNPDER
401: VDQHTRDRQI QRNDEYYEGD NDNDQNMDDV

Best Arabidopsis Sequence Match ( AT3G44680.1 )
(BLAST)

001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS

Arabidopsis Description

HDA9Histone deacetylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.