Factsheet for VIT_13s0106g00170.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g009110.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus, plastid	35.31	44.91
Zm00001d042974_P001	Maize	mitochondrion	28.49	44.65
VIT_04s0044g01510.t01	Wine grape	mitochondrion	38.28	29.52
EES01710	Sorghum	plastid	32.34	25.35
GSMUA_AchrUn_...	Banana	cytosol	32.64	24.83
TraesCS5A01G119300.2	Wheat	mitochondrion	32.64	24.77
TraesCS5D01G126600.1	Wheat	mitochondrion, plastid, vacuole	32.64	24.77
Os12t0182700-01	Rice	mitochondrion	32.05	24.38
TraesCS5B01G121300.1	Wheat	vacuole	32.64	24.28
HORVU5Hr1G037920.1	Barley	cytosol	32.34	24.11
VIT_06s0080g00210.t01	Wine grape	nucleus	14.54	14.08
VIT_17s0000g07280.t01	Wine grape	cytosol	17.51	9.13
VIT_06s0061g01510.t01	Wine grape	cytosol, mitochondrion, nucleus	11.57	9.07
VIT_15s0021g00610.t01	Wine grape	cytosol	11.57	9.07
VIT_17s0000g09070.t01	Wine grape	cytosol	12.46	9.05
VIT_04s0008g00910.t01	Wine grape	plastid	9.5	8.91
VIT_17s0000g04120.t01	Wine grape	nucleus	18.4	8.9
VIT_03s0038g04240.t01	Wine grape	nucleus	12.17	8.17
VIT_14s0006g01820.t01	Wine grape	nucleus	12.17	8.17

Protein Annotations

MapMan:13.3.6.5.2.2.1	Gene3D:3.40.800.20	ProteinID:CCB58740	ProteinID:CCB58740.1	UniProt:F6HVM7	EMBL:FN596257
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004407	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351
GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787
GO:GO:0019538	GO:GO:0032041	GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf
InterPro:IPR037138	PFAM:PF00850	PRINTS:PR01270	PANTHER:PTHR10625	PANTHER:PTHR10625:SF175	SUPFAM:SSF52768
UniParc:UPI0002109C3C	InterPro:Ureohydrolase_dom_sf	ArrayExpress:VIT_13s0106g00170	EnsemblPlantsGene:VIT_13s0106g00170	EnsemblPlants:VIT_13s0106g00170.t01	:

Description

No Description!

Coordinates

chr13:+:9555456..9556768

Molecular Weight (calculated)

36978.9 Da

IEP (calculated)

6.182

GRAVY (calculated)

-0.166

Length

337 amino acids

Sequence
(BLAST)

001: MGFALIRPPG HHAISKGPMD FCVFGNMAIA ARYAQRIHEL KRVFIIDFDV HHGNGTNDAF YDDPDIFFLS AHQDGSYPGT GKIDEVGHGS GEGRRHQLLN
101: EICSESGNNG DGDLCHDKGF EGHDSCFKCS EECDSFEVNQ KSLSRRKGES SGVGHPAVPY PSVEIGTRKQ GRIASLLPTY EDGLCPLLQR AILNKTGTYV
201: QISSKAESII WRALRLFFLN GEQDLPAFLL VDLGIVKYPT YNRINSDHIF PGLNDLLAYE EAIEVAQIMD EVLDDNNSGL VLRCISISNS RLFISCSKST
301: QASVSKSAAT FLSCLLASGV YLKAVLLGIS FLKREHG

Best Arabidopsis Sequence Match ( AT4G33470.1 )
(BLAST)

001: MSMALIVRPF FVPGSAGISG SRNICKKNQW RKYLLKPSGS SINCSFSTEK NPLLPSIQQL ADARLIYSVS AALGHNKESH PECSARVPAI VNALEMNELT
101: PKFRGSQILE LANFKTATVE DIANVHDKAY VFGLEKAMDE ASDSGLIFIE GSGPTYATST TFQDSLIAAG AGMALVDSVI AASRNSVDPP IGFALIRPPG
201: HHAVPKGPMG FCVFGNVAIA ARHAQRTHGL KRIFIIDFDV HHGNGTNDAF TEDPDIFFLS THQDGSYPGT GKISDIGKGK GEGTTLNLPL PGGSGDIAMR
301: TVFEEIIVPC AQRFKPDIIL VSAGYDAHVL DPLANLQFTT ATYYSLAKDI KRLAKEVCGG RCVFFLEGGY NLESLSSSVA DSFRALLGED SLASEFDNPA
401: YLYDEPMRKV RDAIQRAKSI HCL

Arabidopsis Description

HDA14Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:A0A178V1U6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.