Factsheet for Solyc11g067020.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068240	Potato	cytosol	91.86	99.5
VIT_15s0021g00610.t01	Wine grape	cytosol	90.0	90.0
KRH25183	Soybean	cytosol	88.14	88.34
KRH30495	Soybean	cytosol	88.14	88.34
VIT_06s0061g01510.t01	Wine grape	cytosol, mitochondrion, nucleus	88.14	88.14
AT3G44680.1	Thale cress	cytosol	86.51	87.32
Bra019424.1-P	Field mustard	cytosol	85.35	86.15
CDX99186	Canola	cytosol	85.35	86.15
CDY08684	Canola	cytosol, mitochondrion, nucleus, peroxisome	79.53	85.29
EES10729	Sorghum	cytosol	84.88	84.88
TraesCS2A01G293200.1	Wheat	cytosol	84.19	84.19
TraesCS2D01G291000.1	Wheat	cytosol	83.95	83.95
TraesCS2B01G309700.1	Wheat	cytosol	83.72	83.72
Zm00001d003813_P001	Maize	cytosol	83.02	79.87
AT3G44490.1	Thale cress	cytosol	29.3	79.75
AT3G44660.1	Thale cress	cytoskeleton, cytosol, nucleus	26.05	78.87
HORVU2Hr1G072600.1	Barley	endoplasmic reticulum	43.72	75.81
GSMUA_Achr6P17260_001	Banana	plastid	84.42	75.62
HORVU2Hr1G072570.5	Barley	plastid	43.72	66.9
Os04t0409600-01	Rice	cytosol	28.37	64.89
Solyc03g112410.1.1	Tomato	cytosol	53.02	50.78
Solyc09g091440.2.1	Tomato	nucleus	56.98	49.2
Solyc06g071680.2.1	Tomato	cytosol	53.72	49.04
Solyc08g065350.2.1	Tomato	cytosol	18.37	22.77
Solyc01g009110.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus, plastid	13.49	21.89
Solyc06g074080.2.1	Tomato	cytosol	18.14	20.26
Solyc03g119730.2.1	Tomato	nucleus	18.6	13.11
Solyc03g115150.2.1	Tomato	cytosol	19.3	12.83

Protein Annotations

MapMan:12.3.2.1.1	MapMan:12.3.2.1.4.1	Gene3D:3.40.800.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787
GO:GO:0019538	GO:GO:0032041	GO:GO:0046872	GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_1
InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	UniProt:K4D9V9	PFAM:PF00850	PIRSF:PIRSF037913
PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF171	SUPFAM:SSF52768	EnsemblPlantsGene:Solyc11g067020.1
EnsemblPlants:Solyc11g067020.1.1	UniParc:UPI000276A2D6	InterPro:Ureohydrolase_dom_sf	:	:	:

Description

Histone deacetylase 9 [Source:Projected from Arabidopsis thaliana (AT3G44680) UniProtKB/Swiss-Prot;Acc:Q8H0W2]

Coordinates

chr11:+:52788476..52795813

Molecular Weight (calculated)

48886.6 Da

IEP (calculated)

5.089

GRAVY (calculated)

-0.427

Length

430 amino acids

Sequence
(BLAST)

001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLVLA YGLHSKMEVY RPHKAYPVEL AQFHSADYVE FLNRITPDTQ NLFPSEMARY NLGEDCPVFD
101: NLFEFCQIYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CAASGFCYIN DLVLGILELL KYHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKYGDK
201: FFPGTGDMKD TGERDGRFYS INVPLKDGID DGSFTRLFKT IISKVVETYL PGAIVLQCGA DSLAGDRLGC FNLSIDGHAE CVRFVKKFNL PLLVTGGGGY
301: TKENVARCWA LETGVLLDTE LPNEIPDNDY IKYFAPDYSL KLPGGHIENL NSKSYIGTIK MQVMENLRCL QHAPSVQMQE VPPDFYIPDF DEDEQNPDER
401: VNQHTQDKHI QRDDEYYEGD HDNDNHTDDA

Best Arabidopsis Sequence Match ( AT3G44680.1 )
(BLAST)

001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS

Arabidopsis Description

HDA9Histone deacetylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.