CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, peroxisome, mitochondrion

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 2
peroxisome 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019424.1-P	Field mustard	cytosol	100.0	94.13
CDX99186	Canola	cytosol	100.0	94.13
AT3G44660.1	Thale cress	cytoskeleton, cytosol, nucleus	32.17	90.85
AT3G44490.1	Thale cress	cytosol	35.66	90.51
AT3G44680.1	Thale cress	cytosol	95.76	90.14
PGSC0003DMT400068240	Potato	cytosol	79.05	79.85
VIT_15s0021g00610.t01	Wine grape	cytosol	85.54	79.77
Solyc11g067020.1.1	Tomato	cytosol	85.29	79.53
VIT_06s0061g01510.t01	Wine grape	cytosol, mitochondrion, nucleus	85.04	79.3
KRH25183	Soybean	cytosol	84.04	78.55
KRH30495	Soybean	cytosol	83.79	78.32
EES10729	Sorghum	cytosol	80.3	74.88
TraesCS2D01G291000.1	Wheat	cytosol	79.8	74.42
TraesCS2B01G309700.1	Wheat	cytosol	79.8	74.42
TraesCS2A01G293200.1	Wheat	cytosol	79.8	74.42
Zm00001d003813_P001	Maize	cytosol	80.8	72.48
HORVU2Hr1G072600.1	Barley	endoplasmic reticulum	43.64	70.56
GSMUA_Achr6P17260_001	Banana	plastid	82.04	68.54
HORVU2Hr1G072570.5	Barley	plastid	38.4	54.8
Os04t0409600-01	Rice	cytosol	22.94	48.94
CDY16736	Canola	nucleus	55.11	47.02
CDY48127	Canola	nucleus	54.86	46.81
CDY21119	Canola	nucleus	57.11	45.62
CDY30008	Canola	nucleus	57.11	45.62
CDY48157	Canola	cytosol	44.14	44.36
CDY21800	Canola	cytosol	43.39	43.39
CDY39567	Canola	cytosol	43.89	43.35
CDX84385	Canola	cytosol	54.36	43.17
CDY48160	Canola	cytosol	42.64	41.81
CDY39570	Canola	cytosol	42.39	41.56
CDY41500	Canola	cytosol	54.36	38.25
CDY53952	Canola	plastid	18.2	30.04
CDY22682	Canola	cytosol	18.95	19.69
CDY06315	Canola	cytosol	18.7	19.43
CDX88212	Canola	cytosol, golgi, nucleus, plastid	16.96	17.13
CDX82341	Canola	nucleus	17.96	16.22
CDX80555	Canola	cytosol, golgi, nucleus, plastid	14.96	16.04
CDX75356	Canola	plastid	16.96	16.0
CDX68980	Canola	mitochondrion, plastid	16.71	15.76
CDY24487	Canola	cytosol, nucleus, peroxisome	19.2	14.15
CDY42846	Canola	nucleus	17.46	13.54
CDX92243	Canola	nucleus	19.2	13.51
CDY23088	Canola	nucleus	21.2	13.14
CDY02173	Canola	nucleus	20.95	12.9
CDX87200	Canola	peroxisome	20.7	12.67
CDY16823	Canola	peroxisome	20.45	12.62
CDY47012	Canola	cytosol	11.47	10.75
CDY52901	Canola	nucleus	12.22	10.52

Protein Annotations

MapMan:12.3.2.1.1	MapMan:12.3.2.1.4.1	Gene3D:3.40.800.20	GO:A0A078F6K0	UniProt:A0A078F6K0	EnsemblPlants:CDY08684
ProteinID:CDY08684	ProteinID:CDY08684.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325
GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538
GO:GO:0032041	GO:GO:0046872	GO:GO:0070932	EnsemblPlantsGene:GSBRNA2T00000553001	InterPro:His_deacetylse	InterPro:His_deacetylse_1
InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	PFAM:PF00850	PIRSF:PIRSF037913	PRINTS:PR01270
PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF171	SUPFAM:SSF52768	UniParc:UPI0004EE1116	InterPro:Ureohydrolase_dom_sf

Description

BnaC03g54980DHistone deacetylase [Source:UniProtKB/TrEMBL;Acc:A0A078F6K0]

Coordinates

chrLK031988:+:57556..59967

Molecular Weight (calculated)

45889.4 Da

IEP (calculated)

5.191

GRAVY (calculated)

-0.398

Length

401 amino acids

Sequence
(BLAST)

001: MKPHRLCMTH HLILAYGLHS KMEVYRPHKA YPIEMAQFHS PDYVEFLQRI NPENKDLFPN EMARYNLGED CPVFEDMFEF CQIYAGATID AARRLNNKLC
101: DIAINWAGGL HHAKKCDASG FCYINDLVLG ILELLKHHPR VLYIDIDVHH GDGVEEAFYF TDRVMTVSFH KFGDKFFPGT GDVKEIGERE GKFYAINVPL
201: RDGIDDSSFN RLFRAIISKV VEIYQPGAIV LQCGADSLAR DRLGCFNLSI DGHAECVKFV KKFNIPLLVT GGGGYTKENV ARCWTVETGI LLDTELPNEI
301: PDNDYIKYFG PDYSLKIPGG HIENLNTKSY ISTIKAQILD NLRYIQHAPS VQMQEVPPDF YIPDFDEDER NPDVRVDQRS RDKQIQRDDE YFDGDKDNDA
401: S

Best Arabidopsis Sequence Match ( AT3G44680.1 )
(BLAST)

001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS

Arabidopsis Description

HDA9Histone deacetylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.