CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001708.1-P	Field mustard	nucleus	87.16	92.81
CDY24487	Canola	cytosol, nucleus, peroxisome	79.95	65.26
KRH56687	Soybean	nucleus	60.81	64.75
CDX92243	Canola	nucleus	80.18	62.46
AT3G18520.2	Thale cress	cytosol	77.25	60.82
KRH03799	Soybean	nucleus	63.74	52.12
CDY52901	Canola	nucleus	52.7	50.21
Solyc03g119730.2.1	Tomato	nucleus	64.19	46.72
PGSC0003DMT400014582	Potato	nucleus	63.51	46.23
TraesCS5D01G076100.1	Wheat	nucleus	59.01	42.81
TraesCS5A01G065300.1	Wheat	nucleus	59.01	42.67
TraesCS5B01G072100.1	Wheat	nucleus	58.56	42.35
HORVU5Hr1G017550.9	Barley	nucleus	57.88	41.86
GSMUA_Achr8P20260_001	Banana	nucleus	59.01	41.39
VIT_17s0000g04120.t01	Wine grape	nucleus	64.86	41.32
Os07t0164100-01	Rice	nucleus	57.66	41.09
Zm00001d018864_P002	Maize	nucleus	56.98	40.87
OQU88485	Sorghum	nucleus	56.98	40.22
CDY22682	Canola	cytosol	24.77	28.5
CDY06315	Canola	cytosol	24.55	28.24
CDY42846	Canola	nucleus	30.18	25.92
CDX75356	Canola	plastid	23.87	24.94
CDX68980	Canola	mitochondrion, plastid	23.65	24.71
CDY02173	Canola	nucleus	36.04	24.58
CDY23088	Canola	nucleus	35.59	24.42
CDY16823	Canola	peroxisome	34.91	23.85
CDX87200	Canola	peroxisome	34.68	23.51
CDY47012	Canola	cytosol	22.3	23.13
CDY08684	Canola	cytosol, mitochondrion, nucleus, peroxisome	16.22	17.96
CDX99186	Canola	cytosol	16.89	17.61
CDY48127	Canola	nucleus	17.57	16.6
CDY16736	Canola	nucleus	17.57	16.6
CDY48157	Canola	cytosol	14.41	16.04
CDY39567	Canola	cytosol	14.64	16.01
CDY21800	Canola	cytosol	14.41	15.96
CDY21119	Canola	nucleus	18.02	15.94
CDY30008	Canola	nucleus	18.02	15.94
CDX84385	Canola	cytosol	18.02	15.84
CDY48160	Canola	cytosol	13.29	14.43
CDY39570	Canola	cytosol	13.06	14.18
CDY41500	Canola	cytosol	18.02	14.04
CDX88212	Canola	cytosol, golgi, nucleus, plastid	10.81	12.09
CDY53952	Canola	plastid	6.53	11.93
CDX80555	Canola	cytosol, golgi, nucleus, plastid	9.01	10.7
Os07t0164300-01	Rice	plasma membrane	0.0	0.0

Protein Annotations

EnsemblPlants:CDX82341	EnsemblPlantsGene:GSBRNA2T00137459001	Gene3D:3.40.800.20	GO:A0A078CYS4	InterPro:His_deacetylse	InterPro:His_deacetylse_dom
InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	InterPro:Ureohydrolase_dom_sf	PANTHER:PTHR10625	PANTHER:PTHR10625:SF180	PFAM:PF00850
PRINTS:PR01270	ProteinID:CDX82341	ProteinID:CDX82341.1	SEG:seg	SUPFAM:SSF52768	UniParc:UPI0004EE280A
MapMan:12.3.2.1.2	:	:	:	:	:

Description

BnaA03g34800D

Coordinates

chrLK031828:-:688385..691950

Molecular Weight (calculated)

48404.1 Da

IEP (calculated)

9.167

GRAVY (calculated)

-0.218

Length

444 amino acids

Sequence
(BLAST)

001: MKKKSKDEAL KNWEKKKKPS SPKRVEKSLK KKRGRLYIIV KSQGVWDPQA WMFCKDNGLT QVEEKRGGSS PSTSSTAVGF DERMLLHSEF EVKELPHVER
101: PDRLRAIAAS LATAGVFPGR CFPIHAREIT KQELQMVHTS EHVDAVDITS QLHNSYFTSD TYANEYSARA ARLAAGLCAD LAKEIFSGRV KNGFALVRPP
201: GHHAGIKDAM GFCLHNNAAV AALVAQAAGA RKVLIVDWDV HHGNGTQEIF EKNKSVLYIS LHRHEGGKFY PGTGAANEVG TNGAEGYCVN VPWSCSGVGD
301: RDYIYAFQHV VLPIASAFSP DFVIVSAGFD AAKGDPPGCC KISFIVTPAG YSRMTQMLGD LCGGKMLVIL EGGYNLRSIS SSATAVIKVL LGENAENDLP
401: IATAPPSRAC LRTVLEVMKI QMKFWPSLAT SYSKLLSDLG ERRS

Best Arabidopsis Sequence Match ( AT3G18520.2 )
(BLAST)

001: MVVETIERSC EGSKRRHVNG GDIAVPCSGE ECSNGDINVA PGVSAKRARV SREMTFEDIY GADALLNDDD DEDDDCDWEP VQAPMEFVKW CCVNCTMSNP
101: GDMVHCCICG EHKESGILRH GYLASPFFKD TGLIEVEEKY GGSSSATSST AVGFDERMLL HSEFEVKAQP HPERPDRLRA IAASLATAGV FPGRCLPINA
201: REITKQELQM VHTSEHVDAV DTTSQLLYSY FTSDTYANEY SARAARLAAG LCADLATDIF TGRVKNGFAL VRPPGHHAGV RHAMGFCLHN NAAVAALVAQ
301: AAGAKKVLIV DWDVHHGNGT QEIFEQNKSV LYISLHRHEG GNFYPGTGAA DEVGSNGGEG YCVNVPWSCG GVGDKDYIFA FQHVVLPIAS AFSPDFVIIS
401: AGFDAARGDP LGCCDVTPAG YSRMTQMLGD LCGGKMLVIL EGGYNLRSIS ASATAVIKVL LGENPENELP IATTPSVAGL QTVLDVLNIQ LEFWPSLAIS
501: YSKLLSELEA RLIENKSEKS DEKEGCSGSD MVEMGTKEAF VQLSLGSYDF KIKVILESIL PNPS

Arabidopsis Description

HDA15Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4J8S1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.