Factsheet for GSMUA_Achr8P20260_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56687	Soybean	nucleus	46.76	70.98
KRH03799	Soybean	nucleus	51.66	60.22
CDX82341	Canola	nucleus	41.39	59.01
CDY24487	Canola	cytosol, nucleus, peroxisome	50.39	58.64
TraesCS5A01G065300.1	Wheat	nucleus	55.13	56.84
TraesCS5D01G076100.1	Wheat	nucleus	54.66	56.54
TraesCS5B01G072100.1	Wheat	nucleus	54.82	56.51
PGSC0003DMT400014582	Potato	nucleus	54.19	56.23
Solyc03g119730.2.1	Tomato	nucleus	53.87	55.9
HORVU5Hr1G017550.9	Barley	nucleus	54.03	55.7
AT3G18520.2	Thale cress	cytosol	49.13	55.14
Bra022329.1-P	Field mustard	nucleus	49.61	55.09
CDX92243	Canola	nucleus	49.61	55.09
Bra001708.1-P	Field mustard	nucleus	36.18	54.92
Zm00001d018864_P002	Maize	nucleus	52.61	53.8
Os07t0164100-01	Rice	nucleus	52.92	53.77
OQU88485	Sorghum	nucleus	52.61	52.94
VIT_17s0000g04120.t01	Wine grape	nucleus	54.82	49.78
CDY52901	Canola	nucleus	30.49	41.42
GSMUA_Achr6P19520_001	Banana	cytosol	18.33	30.05
GSMUA_AchrUn_...	Banana	cytosol	19.12	27.31
GSMUA_Achr4P03250_001	Banana	cytosol	24.96	23.8
GSMUA_Achr2P06520_001	Banana	cytosol	12.32	21.43
GSMUA_AchrUn_...	Banana	cytosol	12.8	20.56
GSMUA_Achr1P14440_001	Banana	cytosol	13.27	20.19
GSMUA_AchrUn_...	Banana	mitochondrion	11.22	19.61
GSMUA_Achr8P04190_001	Banana	cytosol, nucleus, plasma membrane	12.95	19.03
GSMUA_Achr6P17260_001	Banana	plastid	14.38	18.96
GSMUA_Achr5P06320_001	Banana	nucleus	12.8	17.46
GSMUA_Achr2P19590_001	Banana	nucleus	12.32	17.14
GSMUA_Achr10P...	Banana	plastid	9.95	14.35
GSMUA_Achr7P09060_001	Banana	mitochondrion	1.11	13.46
GSMUA_Achr7P09050_001	Banana	cytosol	5.53	12.46
Os07t0164300-01	Rice	plasma membrane	0.0	0.0

Protein Annotations

MapMan:12.3.2.1.2	Gene3D:3.40.800.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351
GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009294
GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538
GO:GO:0032041	GO:GO:0070932	EnsemblPlantsGene:GSMUA_Achr8G20260_001	EnsemblPlants:GSMUA_Achr8P20260_001	EnsemblPlants:GSMUA_Achr8T20260_001	InterPro:His_deacetylse
InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR001876	InterPro:IPR037138	UniProt:M0TS29	PFAM:PF00850
PRINTS:PR01270	ScanProsite:PS01358	PANTHER:PTHR10625	PANTHER:PTHR10625:SF180	SUPFAM:SSF52768	UniParc:UPI0002963667
InterPro:Ureohydrolase_dom_sf	InterPro:Znf_RanBP2	SEG:seg	:	:	:

Description

Histone deacetylase 15 [Source:GMGC_GENE;Acc:GSMUA_Achr8G20260_001]

Coordinates

chr8:-:25324082..25339819

Molecular Weight (calculated)

69717.1 Da

IEP (calculated)

6.183

GRAVY (calculated)

-0.315

Length

633 amino acids

Sequence
(BLAST)

001: MASETLCASD QRGGNFCRES KGHNEINPGE SQKSFSCSCE CHGKSASQAR NGSVSFGERF HKDHLGDHSG GLLTEKSNQT DVGSERLVGV SLSDVRTVTN
101: ASEKACLHEE HESCDACNSI KLQQYMKKQR NNTLQDLYFQ EEYDDDDDDD SDWEPVSPFV IKKWFCANCT MPNFDDVCHC EVCGEDRECE FFRFDPIDSL
201: VGQEAQMSNE TDAGSSDLSL RTRTAIGFDE KMLLHAEVEM KSHPHPERPD RLRAIASSLA AAGIFPGKCS LIPAREITQE ELLRVHSLDH VEAVQHTSHM
301: LASYFTSDTY ANEHSACAAR VAAGLCSDLA RTIVSGSAKN GFALVRPPGH HAGVRQAMGF CLHNNAAVAA LAAQSAGAKK VLIVDWDVHH GNGTQEIFEG
401: NKSVLYISLH RHENGRFYPG TGAVDEVGIM DAEGFSVNIP WSCGGVGDND YIYAFQHVVL PIALEFAPDI TIVSAGFDAA RGDPLGCCDV TPAGYAQMTH
501: LLTSISEGKL LVILEGGYNL RSISTSATAV VKVLLGDNPY CEMSDIVPSR AGLQAILQVL KVQLKYWPIL KATYLVLQSQ WGLVASDNRD QMKKRRHLVG
601: PVWWKWGSKR FVYELFYGRP HSRHVHVKRM RLG

Best Arabidopsis Sequence Match ( AT3G18520.1 )
(BLAST)

001: MVVETIERSC EGSKRRHVNG GDIAVPCSGE ECSNGDINVA PGVSAKRARV SREMTFEDIY GADALLNDDD DEDDDCDWEP VQAPMEFVKW CCVNCTMSNP
101: GDMVHCCICG EHKESGILRH GYLASPFFKD TGLIEVEEKY GGSSSATSST AVGFDERMLL HSEFEVKAQP HPERPDRLRA IAASLATAGV FPGRCLPINA
201: REITKQELQM VHTSEHVDAV DTTSQLLYSY FTSDTYANEY SARAARLAAG LCADLATDIF TGRVKNGFAL VRPPGHHAGV RHAMGFCLHN NAAVAALVAQ
301: AAGAKKVLIV DWDVHHGNGT QEIFEQNKSV LYISLHRHEG GNFYPGTGAA DEVGSNGGEG YCVNVPWSCG GVGDKDYIFA FQHVVLPIAS AFSPDFVIIS
401: AGFDAARGDP LGCCDVTPAG YSRMTQMLGD LCGGKMLVIL EGGYNLRSIS ASATAVIKVL LGENPENELP IATTPSVAGL QTVLDVLNIQ LEFWPSLAIS
501: YSKLLSELEA RLIENKKNQM KRKVVRVPTW WKWGRKKLLY NFLSARMISR SK

Arabidopsis Description

HDA15Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4J8S1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.