Factsheet for Bra022329.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92243	Canola	nucleus	99.12	99.12
AT3G18520.2	Thale cress	cytosol	79.82	80.67
Bra001708.1-P	Field mustard	nucleus	54.56	74.58
KRH56687	Soybean	nucleus	50.35	68.82
KRH03799	Soybean	nucleus	58.6	61.51
PGSC0003DMT400014582	Potato	nucleus	59.65	55.74
Solyc03g119730.2.1	Tomato	nucleus	59.47	55.57
VIT_17s0000g04120.t01	Wine grape	nucleus	61.4	50.22
GSMUA_Achr8P20260_001	Banana	nucleus	55.09	49.61
TraesCS5D01G076100.1	Wheat	nucleus	52.46	48.86
TraesCS5A01G065300.1	Wheat	nucleus	52.46	48.7
TraesCS5B01G072100.1	Wheat	nucleus	52.11	48.37
HORVU5Hr1G017550.9	Barley	nucleus	51.58	47.88
Os07t0164100-01	Rice	nucleus	51.4	47.03
Zm00001d018864_P002	Maize	nucleus	50.18	46.2
OQU88485	Sorghum	nucleus	50.35	45.63
Bra031628.1-P	Field mustard	cytosol	20.53	30.31
Bra029339.1-P	Field mustard	cytosol	25.26	29.94
Bra012984.1-P	Field mustard	nucleus	29.65	26.12
Bra011444.1-P	Field mustard	golgi, vacuole	19.82	25.17
Bra035942.1-P	Field mustard	peroxisome	28.07	24.62
Bra019424.1-P	Field mustard	cytosol	14.39	19.25
Bra035858.1-P	Field mustard	nucleus	15.26	18.51
Bra040131.1-P	Field mustard	nucleus	15.96	18.13
Bra018073.1-P	Field mustard	cytosol	12.28	17.54
Bra019516.1-P	Field mustard	cytosol	12.11	17.21
Bra038607.1-P	Field mustard	cytosol	15.44	15.44
Bra009877.1-P	Field mustard	cytosol	9.3	15.19
Bra018072.1-P	Field mustard	cytosol	10.88	14.03
Os07t0164300-01	Rice	plasma membrane	0.0	0.0

Protein Annotations

MapMan:12.3.2.1.2	Gene3D:3.40.800.20	EnsemblPlantsGene:Bra022329	EnsemblPlants:Bra022329.1	EnsemblPlants:Bra022329.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004407	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575
GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_dom
InterPro:His_deacetylse_dom_sf	InterPro:IPR001876	InterPro:IPR037138	UniProt:M4E0N2	PFAM:PF00850	PRINTS:PR01270
ScanProsite:PS01358	PANTHER:PTHR10625	PANTHER:PTHR10625:SF180	SUPFAM:SSF52768	UniParc:UPI0002548156	InterPro:Ureohydrolase_dom_sf
InterPro:Znf_RanBP2	SEG:seg	:	:	:	:

Description

AT3G18520 (E=6e-244) HDA15, ATHDA15 | HDA15; histone deacetylase

Coordinates

chrA05:-:18366258..18369886

Molecular Weight (calculated)

62660.2 Da

IEP (calculated)

5.684

GRAVY (calculated)

-0.242

Length

570 amino acids

Sequence
(BLAST)

001: MVVETLDSSC DGSKRKHANG GEETHLDELS NGDNGVSSTK RARVSRGEMT FQDIYDADAL LNEEDEEDDS DWEPLQQQMM PVEFVKWGCV NCTMSNPGDM
101: VHCHICGEHK ESGILRHGYL ASPFFKDTGL AEVEEKCGGS SSATSSTAVG FDERMLLHSE FEVKAQPHPE RPDRLRAIAA SLATAGVFPG RCLPIHAREI
201: TKQELQMVHT SELVDAVNIT SQLLYSYFTT DTYANEYSAR AARLAAGLCA DLATEIYSGR VKNGFALVRP PGHHAGIKHA MGFCLHNNAA VAALVAQAAG
301: ARKVLIVDWD VHHGNGTQEI FEQNKSVLYI SLHRHEGGNF YPGTGAADEV GTNGAEGYCV NVPWSCGGVG DKDYIYAFQH VVLPIASAFS PDFVIVSAGF
401: DAARGDPLGC CDVTPAGYSR MTQMLGDICG GKMLVILEGG YNLRSISSSA TAVIKVLLGE NSENDDLPIA TTPSKAGLET VIEVMNIQMK FWPSLATAYS
501: KLLSEWETRL IENKKNQVKR KLVRVPTWWK WGRKKFMYRC LDSVEYFFSF KWQKELYYGA RAAPLDYLSI

Best Arabidopsis Sequence Match ( AT3G18520.1 )
(BLAST)

001: MVVETIERSC EGSKRRHVNG GDIAVPCSGE ECSNGDINVA PGVSAKRARV SREMTFEDIY GADALLNDDD DEDDDCDWEP VQAPMEFVKW CCVNCTMSNP
101: GDMVHCCICG EHKESGILRH GYLASPFFKD TGLIEVEEKY GGSSSATSST AVGFDERMLL HSEFEVKAQP HPERPDRLRA IAASLATAGV FPGRCLPINA
201: REITKQELQM VHTSEHVDAV DTTSQLLYSY FTSDTYANEY SARAARLAAG LCADLATDIF TGRVKNGFAL VRPPGHHAGV RHAMGFCLHN NAAVAALVAQ
301: AAGAKKVLIV DWDVHHGNGT QEIFEQNKSV LYISLHRHEG GNFYPGTGAA DEVGSNGGEG YCVNVPWSCG GVGDKDYIFA FQHVVLPIAS AFSPDFVIIS
401: AGFDAARGDP LGCCDVTPAG YSRMTQMLGD LCGGKMLVIL EGGYNLRSIS ASATAVIKVL LGENPENELP IATTPSVAGL QTVLDVLNIQ LEFWPSLAIS
501: YSKLLSELEA RLIENKKNQM KRKVVRVPTW WKWGRKKLLY NFLSARMISR SK

Arabidopsis Description

HDA15Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4J8S1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.