Factsheet for Bra019424.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08684	Canola	cytosol, mitochondrion, nucleus, peroxisome	94.13	100.0
CDX99186	Canola	cytosol	100.0	100.0
AT3G44680.1	Thale cress	cytosol	96.01	96.01
AT3G44660.1	Thale cress	cytoskeleton, cytosol, nucleus	30.28	90.85
AT3G44490.1	Thale cress	cytosol	33.57	90.51
PGSC0003DMT400068240	Potato	cytosol	80.28	86.15
VIT_15s0021g00610.t01	Wine grape	cytosol	86.15	85.35
Solyc11g067020.1.1	Tomato	cytosol	86.15	85.35
VIT_06s0061g01510.t01	Wine grape	cytosol, mitochondrion, nucleus	85.68	84.88
KRH25183	Soybean	cytosol	84.04	83.45
KRH30495	Soybean	cytosol	83.8	83.22
EES10729	Sorghum	cytosol	80.52	79.77
TraesCS2D01G291000.1	Wheat	cytosol	80.05	79.3
TraesCS2B01G309700.1	Wheat	cytosol	80.05	79.3
TraesCS2A01G293200.1	Wheat	cytosol	80.05	79.3
Zm00001d003813_P001	Maize	cytosol	78.87	75.17
HORVU2Hr1G072600.1	Barley	endoplasmic reticulum	42.25	72.58
GSMUA_Achr6P17260_001	Banana	plastid	81.69	72.5
HORVU2Hr1G072570.5	Barley	plastid	41.08	62.28
Os04t0409600-01	Rice	cytosol	26.29	59.57
Bra035858.1-P	Field mustard	nucleus	54.46	49.36
Bra040131.1-P	Field mustard	nucleus	56.81	48.21
Bra018073.1-P	Field mustard	cytosol	42.96	45.86
Bra019516.1-P	Field mustard	cytosol	42.72	45.39
Bra018072.1-P	Field mustard	cytosol	41.78	40.27
Bra038607.1-P	Field mustard	cytosol	53.76	40.18
Bra009877.1-P	Field mustard	cytosol	16.9	20.63
Bra031628.1-P	Field mustard	cytosol	18.54	20.47
Bra029339.1-P	Field mustard	cytosol	19.25	17.05
Bra001708.1-P	Field mustard	nucleus	16.2	16.55
Bra011444.1-P	Field mustard	golgi, vacuole	16.43	15.59
Bra012984.1-P	Field mustard	nucleus	22.07	14.53
Bra022329.1-P	Field mustard	nucleus	19.25	14.39
Bra035942.1-P	Field mustard	peroxisome	20.66	13.54

Protein Annotations

MapMan:12.3.2.1.1	MapMan:12.3.2.1.4.1	Gene3D:3.40.800.20	EnsemblPlantsGene:Bra019424	EnsemblPlants:Bra019424.1	EnsemblPlants:Bra019424.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0046872
GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138
UniProt:M4DSD1	PFAM:PF00850	PIRSF:PIRSF037913	PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625
PANTHER:PTHR10625:SF171	SUPFAM:SSF52768	UniParc:UPI0001890A98	InterPro:Ureohydrolase_dom_sf	:	:

Description

AT3G44680 (E=5e-253) HDA9, HDA09 | HDA9 (HISTONE DEACETYLASE 9); histone deacetylase

Coordinates

chrA06:-:13929170..13931845

Molecular Weight (calculated)

48751.7 Da

IEP (calculated)

5.306

GRAVY (calculated)

-0.421

Length

426 amino acids

Sequence
(BLAST)

001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM AQFHSPDYVE FLQRINPENK DLFPNEMARY NLGEDCPVFE
101: DMFEFCQIYA GATIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLRDGID DSSFNRLFRA IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNI PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPDNDY IKYFGPDYSL KIPGGHIENL NTKSYISTIK AQILDNLRYI QHAPSVQMQE VPPDFYIPDF DEDERNPDVR
401: VDQRSRDKQI QRDDEYFDGD KDNDAS

Best Arabidopsis Sequence Match ( AT3G44680.1 )
(BLAST)

001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS

Arabidopsis Description

HDA9Histone deacetylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.