Factsheet for AT3G44660.1

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, nucleus
Any Predictor:	cytoskeleton, cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G44490.1	Thale cress	cytosol	99.3	89.24
HORVU2Hr1G072600.1	Barley	endoplasmic reticulum	72.54	41.53
CDY08684	Canola	cytosol, mitochondrion, nucleus, peroxisome	90.85	32.17
AT3G44680.1	Thale cress	cytosol	95.77	31.92
Bra019424.1-P	Field mustard	cytosol	90.85	30.28
CDX99186	Canola	cytosol	90.85	30.28
KRH30495	Soybean	cytosol	82.39	27.27
VIT_15s0021g00610.t01	Wine grape	cytosol	82.39	27.21
KRH25183	Soybean	cytosol	80.99	26.81
VIT_06s0061g01510.t01	Wine grape	cytosol, mitochondrion, nucleus	80.99	26.74
Solyc11g067020.1.1	Tomato	cytosol	78.87	26.05
EES10729	Sorghum	cytosol	73.94	24.42
TraesCS2D01G291000.1	Wheat	cytosol	71.83	23.72
TraesCS2B01G309700.1	Wheat	cytosol	71.83	23.72
TraesCS2A01G293200.1	Wheat	cytosol	71.83	23.72
Zm00001d003813_P001	Maize	cytosol	74.65	23.71
GSMUA_Achr6P17260_001	Banana	plastid	78.87	23.33
PGSC0003DMT400068240	Potato	cytosol	60.56	21.66
AT5G35600.1	Thale cress	cytosol	34.51	11.98
AT4G38130.1	Thale cress	nucleus	42.25	11.98
AT5G63110.1	Thale cress	nucleus	35.92	10.83
AT5G61060.2	Thale cress	cytosol	12.68	2.71
AT3G18520.2	Thale cress	cytosol	9.86	2.48
AT4G33470.1	Thale cress	plastid	6.34	2.13
AT5G26040.2	Thale cress	endoplasmic reticulum	5.63	2.07
AT1G08460.1	Thale cress	cytosol	4.93	1.86
AT5G61070.1	Thale cress	cytosol	7.75	1.61
HORVU2Hr1G072570.5	Barley	plastid	0.7	0.36
Os04t0409600-01	Rice	cytosol	0.0	0.0

Protein Annotations

MapMan:12.3.2.1.1	Gene3D:3.40.800.20	EntrezGene:823592	ProteinID:AEE77927.1	ArrayExpress:AT3G44660	EnsemblPlantsGene:AT3G44660
RefSeq:AT3G44660	TAIR:AT3G44660	RefSeq:AT3G44660-TAIR-G	EnsemblPlants:AT3G44660.1	TAIR:AT3G44660.1	Unigene:At.53729
ProteinID:CAB72468.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0070932
InterPro:His_deacetylse	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	RefSeq:NP_190052.1	PANTHER:PTHR10625	PANTHER:PTHR10625:SF171
UniProt:Q9M1N8	SUPFAM:SSF52768	UniParc:UPI00000AB4AB	InterPro:Ureohydrolase_dom_sf	Symbol:hda10	SEG:seg

Description

HDA10Putative histone deacetylase 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1N8]

Coordinates

chr3:-:16214964..16215785

Molecular Weight (calculated)

16384.9 Da

IEP (calculated)

4.064

GRAVY (calculated)

-0.739

Length

142 amino acids

Sequence
(BLAST)

001: MAFSMLFTGH AECGGYTKEN VARCWTVETG ILLDTELPNE IPENDYIKYF APDFSLKIPG GHIENLNTKS YISSIKVQIL ENLRYIQHAP SVQMQEVPPD
101: FYIPDFDEDE QNPDVRVDQR SRDKQIQRDD EYFDGDNDND AS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.