Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 2
- endoplasmic reticulum 4
- vacuole 2
- plasma membrane 2
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009877.1-P | Field mustard | cytosol | 80.1 | 88.83 |
| CDX88212 | Canola | cytosol, golgi, nucleus, plastid | 86.82 | 84.63 |
| CDX80555 | Canola | cytosol, golgi, nucleus, plastid | 81.4 | 84.22 |
| KRH05486 | Soybean | cytosol | 68.99 | 76.72 |
| VIT_04s0008g00910.t01 | Wine grape | plastid | 70.54 | 76.04 |
| Solyc08g065350.2.1 | Tomato | cytosol | 65.63 | 73.2 |
| PGSC0003DMT400076991 | Potato | cytosol | 65.37 | 71.47 |
| Os06t0571100-01 | Rice | plastid | 63.57 | 69.89 |
| KXG29820 | Sorghum | cytosol | 63.05 | 69.32 |
| TraesCS7B01G266000.1 | Wheat | plastid | 63.05 | 69.12 |
| TraesCS7D01G360500.1 | Wheat | plastid | 62.79 | 68.84 |
| TraesCS7A01G362600.1 | Wheat | plastid | 63.05 | 68.73 |
| EER89968 | Sorghum | plastid | 60.21 | 66.57 |
| Zm00001d046348_P003 | Maize | plastid | 59.95 | 60.89 |
| GSMUA_Achr10P... | Banana | plastid | 68.73 | 60.59 |
| HORVU0Hr1G021730.1 | Barley | cytosol | 16.54 | 53.33 |
| AT5G63110.1 | Thale cress | nucleus | 23.26 | 19.11 |
| AT5G35600.1 | Thale cress | cytosol | 19.38 | 18.34 |
| AT3G44680.1 | Thale cress | cytosol | 19.9 | 18.08 |
| AT4G38130.1 | Thale cress | nucleus | 21.45 | 16.57 |
| AT1G08460.1 | Thale cress | cytosol | 14.47 | 14.85 |
| AT4G33470.1 | Thale cress | plastid | 13.7 | 12.53 |
| AT3G18520.2 | Thale cress | cytosol | 14.73 | 10.11 |
| AT5G61060.2 | Thale cress | cytosol | 16.54 | 9.64 |
| AT5G61070.1 | Thale cress | cytosol | 16.28 | 9.24 |
| AT3G44490.1 | Thale cress | cytosol | 3.1 | 7.59 |
| AT3G44660.1 | Thale cress | cytoskeleton, cytosol, nucleus | 2.07 | 5.63 |
Protein Annotations
| MapMan:12.3.2.1.3 | Gene3D:3.40.800.20 | EntrezGene:832673 | UniProt:A0A178UN60 | ProteinID:AAD40129.1 | ProteinID:AED93516.1 |
| ProteinID:AED93517.1 | EMBL:AF428336 | EMBL:AF510165 | EMBL:AF510671 | ArrayExpress:AT5G26040 | EnsemblPlantsGene:AT5G26040 |
| RefSeq:AT5G26040 | TAIR:AT5G26040 | RefSeq:AT5G26040-TAIR-G | EnsemblPlants:AT5G26040.2 | TAIR:AT5G26040.2 | EMBL:BT002252 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004407 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006325 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0016569 | GO:GO:0016575 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0032041 |
| GO:GO:0070932 | Symbol:HDA2 | InterPro:His_deacetylse | InterPro:His_deacetylse_dom | InterPro:His_deacetylse_dom_sf | InterPro:IPR037138 |
| RefSeq:NP_568480.2 | RefSeq:NP_851078.1 | ProteinID:OAO94807.1 | PFAM:PF00850 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR01270 | PANTHER:PTHR43497 |
| PANTHER:PTHR43497:SF2 | UniProt:Q944K3 | SUPFAM:SSF52768 | TMHMM:TMhelix | UniParc:UPI0000196EDB | InterPro:Ureohydrolase_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
HDA2Histone deacetylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q944K3]
Coordinates
chr5:-:9099152..9101682
Molecular Weight (calculated)
43806.8 Da
IEP (calculated)
7.005
GRAVY (calculated)
-0.035
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MTHTRVISTW TELTRDLAIY LLFTFFAIKV FKFLFSCNRT SEISSFSMAT HPEALRRERI LNSKLYFDVP LSKVSIIYSS SYDISFMGIE KLHPFDSSKW
101: GRVCKFLVSD GFLEEKAIVE PLEASKIDLL VVHSENYLNS LKSSATVARI TEVAPVAFFP NFLVQQKVLY PFRKQVGGTI LAAKLATERG WAINIGGGFH
201: HCTAERGGGF CAFADISLCI HFAFLRLRIS RVMIIDLDAH QGNGHETDLG DDNRVYILDM YNPEIYPFDY RARRFIDQKV EVMSGTTTDE YLRKLDEALE
301: VASRNFQPEL VIYNAGTDIL DGDPLGLLKI SPDGITSRDE KVFRFAREKN IPLVMLTSGG YMKSSARVIA DSIENLSRQG LIQTRPE
101: GRVCKFLVSD GFLEEKAIVE PLEASKIDLL VVHSENYLNS LKSSATVARI TEVAPVAFFP NFLVQQKVLY PFRKQVGGTI LAAKLATERG WAINIGGGFH
201: HCTAERGGGF CAFADISLCI HFAFLRLRIS RVMIIDLDAH QGNGHETDLG DDNRVYILDM YNPEIYPFDY RARRFIDQKV EVMSGTTTDE YLRKLDEALE
301: VASRNFQPEL VIYNAGTDIL DGDPLGLLKI SPDGITSRDE KVFRFAREKN IPLVMLTSGG YMKSSARVIA DSIENLSRQG LIQTRPE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.