Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012984.1-P | Field mustard | nucleus | 83.43 | 85.63 |
| CDY23088 | Canola | nucleus | 83.43 | 85.63 |
| CDY02173 | Canola | nucleus | 83.28 | 84.95 |
| VIT_17s0000g07280.t01 | Wine grape | cytosol | 63.55 | 65.33 |
| KRH56821 | Soybean | nucleus | 61.75 | 62.5 |
| KRH03123 | Soybean | cytosol | 60.54 | 61.28 |
| GSMUA_Achr4P03250_001 | Banana | cytosol | 58.43 | 58.43 |
| Solyc03g115150.2.1 | Tomato | cytosol | 55.87 | 57.34 |
| TraesCS1A01G317100.1 | Wheat | mitochondrion | 33.43 | 55.92 |
| TraesCS1B01G329500.1 | Wheat | cytosol | 32.53 | 55.38 |
| TraesCS1D01G317100.1 | Wheat | mitochondrion | 32.38 | 54.57 |
| AT5G61070.1 | Thale cress | cytosol | 54.82 | 53.37 |
| Os07t0602200-01 | Rice | cytosol, nucleus, plastid | 55.72 | 53.24 |
| Zm00001d006780_P011 | Maize | cytosol | 55.12 | 51.99 |
| EER97493 | Sorghum | plastid | 54.82 | 51.78 |
| TraesCS2A01G177100.1 | Wheat | cytosol | 53.61 | 51.37 |
| TraesCS2D01G185200.1 | Wheat | cytosol, golgi | 53.46 | 51.23 |
| HORVU1Hr1G066760.1 | Barley | plastid | 33.73 | 51.14 |
| TraesCS2B01G204100.1 | Wheat | cytosol | 53.31 | 51.08 |
| HORVU2Hr1G032540.2 | Barley | plastid | 54.67 | 49.52 |
| AT3G18520.2 | Thale cress | cytosol | 25.45 | 29.96 |
| AT1G08460.1 | Thale cress | cytosol | 15.66 | 27.59 |
| AT4G33470.1 | Thale cress | plastid | 16.87 | 26.48 |
| AT4G38130.1 | Thale cress | nucleus | 17.47 | 23.15 |
| AT3G44680.1 | Thale cress | cytosol | 13.86 | 21.6 |
| AT5G35600.1 | Thale cress | cytosol | 12.5 | 20.29 |
| AT5G63110.1 | Thale cress | nucleus | 14.31 | 20.17 |
| AT5G26040.2 | Thale cress | endoplasmic reticulum | 9.64 | 16.54 |
| AT3G44660.1 | Thale cress | cytoskeleton, cytosol, nucleus | 2.71 | 12.68 |
| AT3G44490.1 | Thale cress | cytosol | 3.01 | 12.66 |
Protein Annotations
| MapMan:12.3.2.1.2 | Gene3D:3.10.490.10 | Gene3D:3.40.800.20 | EntrezGene:836227 | ProteinID:AED97418.1 | ArrayExpress:AT5G61060 |
| EnsemblPlantsGene:AT5G61060 | RefSeq:AT5G61060 | TAIR:AT5G61060 | RefSeq:AT5G61060-TAIR-G | EnsemblPlants:AT5G61060.2 | TAIR:AT5G61060.2 |
| Unigene:At.44759 | UniProt:F4K1Z5 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004407 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006325 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016569 | GO:GO:0016575 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0032041 | GO:GO:0070932 | Symbol:HDA05 | InterPro:His_deacetylse | InterPro:His_deacetylse_dom | InterPro:His_deacetylse_dom_sf |
| InterPro:IPR037138 | RefSeq:NP_001190583.1 | PFAM:PF00850 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR01270 | PANTHER:PTHR10625 | PANTHER:PTHR10625:SF177 |
| SUPFAM:SSF52768 | UniParc:UPI0001E9309A | InterPro:Ureohydrolase_dom_sf | : | : | : |
Description
HDA05Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4K1Z5]
Coordinates
chr5:-:24566783..24570991
Molecular Weight (calculated)
73111.1 Da
IEP (calculated)
5.239
GRAVY (calculated)
-0.226
Length
664 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMAGESSGK KIGDCDGKVA GNRQRKVGLI YDETMCKHDT PDGEDHPECP DRIRVIWEKL QLAGVSQRCV VLGSSKAEDK HLQLVHTKDH VNLVKSISTK
101: QKDYRRNRIA SQLNSIYLNG GSSEAAYLAA GSVVKLAEKV AEGELDCGFA IVRPPGHHAE ADEAMGFCLF NNVAVAASFL LNERPDLGVK KILIVDWDVH
201: HGNGTQKMFW KDPRVLFFSV HRHEYGGFYP AGDDGDYNMV GEGPGEGFNI NVPWDQGRCG DADYLAAWDH ILIPVAREFN PDVIFLSAGF DAAINDPLGG
301: CCVTPYGYSV MLKKVGVELM EFAQGKIVLA LEGGYNLDSI AKSSLACVQV LLEDKQIQGP PEAYPFESTW RVIQAVRKRL CTYWPSLADE LSWKLINQKT
401: PTPIILISSS DSETEDNAQG LLDQMSKLSI ENPQGTLLEN HQVEPASTSW RADLAKVDVW YASFGSNMWK PRFLCYIQGG QVDGLKKVCV GSMDKSPPKE
501: TVWETFPHRL FFGRESSVGW GVGGVAFTNP LANLIDQTHM CLYRITLEQF NDVLSQENGL NVDSDSPVFD LAALQLVDNK GSILEAPLNS WYGNVVCLGK
601: ERDIPILTMT CTLSAVEKFK SGEIPIRPPA KAYANTLIRG LVEGGRLSKE EAEAYIDKAV SKPL
101: QKDYRRNRIA SQLNSIYLNG GSSEAAYLAA GSVVKLAEKV AEGELDCGFA IVRPPGHHAE ADEAMGFCLF NNVAVAASFL LNERPDLGVK KILIVDWDVH
201: HGNGTQKMFW KDPRVLFFSV HRHEYGGFYP AGDDGDYNMV GEGPGEGFNI NVPWDQGRCG DADYLAAWDH ILIPVAREFN PDVIFLSAGF DAAINDPLGG
301: CCVTPYGYSV MLKKVGVELM EFAQGKIVLA LEGGYNLDSI AKSSLACVQV LLEDKQIQGP PEAYPFESTW RVIQAVRKRL CTYWPSLADE LSWKLINQKT
401: PTPIILISSS DSETEDNAQG LLDQMSKLSI ENPQGTLLEN HQVEPASTSW RADLAKVDVW YASFGSNMWK PRFLCYIQGG QVDGLKKVCV GSMDKSPPKE
501: TVWETFPHRL FFGRESSVGW GVGGVAFTNP LANLIDQTHM CLYRITLEQF NDVLSQENGL NVDSDSPVFD LAALQLVDNK GSILEAPLNS WYGNVVCLGK
601: ERDIPILTMT CTLSAVEKFK SGEIPIRPPA KAYANTLIRG LVEGGRLSKE EAEAYIDKAV SKPL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.