Factsheet for Solyc03g115150.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g07280.t01	Wine grape	cytosol	64.61	64.71
CDY23088	Canola	nucleus	58.89	58.89
Bra012984.1-P	Field mustard	nucleus	58.27	58.27
TraesCS1B01G329500.1	Wheat	cytosol	35.09	58.21
TraesCS1D01G317100.1	Wheat	mitochondrion	35.24	57.87
CDY02173	Canola	nucleus	58.11	57.76
TraesCS1A01G317100.1	Wheat	mitochondrion	35.39	57.68
Bra035942.1-P	Field mustard	peroxisome	57.81	57.54
KRH56821	Soybean	nucleus	58.27	57.47
CDY16823	Canola	peroxisome	57.65	57.38
CDX87200	Canola	peroxisome	57.03	56.34
KRH03123	Soybean	cytosol	56.72	55.95
AT5G61060.2	Thale cress	cytosol	57.34	55.87
GSMUA_Achr4P03250_001	Banana	cytosol	57.34	55.87
Os07t0602200-01	Rice	cytosol, nucleus, plastid	56.57	52.66
HORVU1Hr1G066760.1	Barley	plastid	35.39	52.28
TraesCS2A01G177100.1	Wheat	cytosol	54.71	51.08
EER97493	Sorghum	plastid	55.18	50.78
Zm00001d006780_P011	Maize	cytosol	55.18	50.71
TraesCS2B01G204100.1	Wheat	cytosol	54.1	50.51
TraesCS2D01G185200.1	Wheat	cytosol, golgi	54.1	50.51
Bra029339.1-P	Field mustard	cytosol	36.48	49.06
HORVU2Hr1G032540.2	Barley	plastid	55.18	48.7
CDY42846	Canola	nucleus	36.63	45.84
CDY47012	Canola	cytosol	26.12	39.49
AT5G61070.1	Thale cress	cytosol	41.42	39.3
Solyc01g009110.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus, plastid	14.22	34.72
Solyc06g074080.2.1	Tomato	cytosol	16.23	27.27
Solyc03g119730.2.1	Tomato	nucleus	23.49	24.92
Solyc08g065350.2.1	Tomato	cytosol	10.97	20.46
Solyc11g067020.1.1	Tomato	cytosol	12.83	19.3
Solyc03g112410.1.1	Tomato	cytosol	13.29	19.15
Solyc06g071680.2.1	Tomato	cytosol	13.91	19.11
Solyc09g091440.2.1	Tomato	nucleus	14.68	19.08

Protein Annotations

MapMan:12.3.2.1.2	Gene3D:3.10.490.10	Gene3D:3.40.800.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325
GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538
GO:GO:0032041	GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138
UniProt:K4BL17	PFAM:PF00850	PRINTS:PR01270	PANTHER:PTHR10625	PANTHER:PTHR10625:SF177	SUPFAM:SSF52768
EnsemblPlantsGene:Solyc03g115150.2	EnsemblPlants:Solyc03g115150.2.1	UniParc:UPI000276878B	InterPro:Ureohydrolase_dom_sf	:	:

Description

Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:K4BL17]

Coordinates

chr3:-:64934883..64949157

Molecular Weight (calculated)

72853.9 Da

IEP (calculated)

6.395

GRAVY (calculated)

-0.360

Length

647 amino acids

Sequence
(BLAST)

001: MDSGERRRVG LIYDKRMKKH FDLEEVKHPE SADRIQKIWN KLKDSGIAKR CTVMGGKEAK DEHISLVHNR KHIDFIKSIS SKEEMFWKEM AKKYNSVYFN
101: QGSSEAAYIS AGCVIEVAEK VAEGELDSAF AIVRPPGHHA EPNQPMGFCL FNNVAIATKY LLDKRADLGI KKILIVDWDV HHGNGTQKMF WKDPRVLFFS
201: VHRHDFGTYY PCDEAGSHKM TGEGAGKGYN INVPWEHGGC GDADYLAVWD HVLIPVAKEF GPDIILISAG FDAAIGDPLG GCCVSPHGYA VMLNKLLEFA
301: GGKIVMALEG GYDKVSIANS VQACMEVLLK QKPIIGSSEA YPFESSWRVI RAVRKTLSPF WQSLSERLPV KITSMSSPYI QVVSSDSEDE YNTFSNRVSQ
401: HLEMDIENVI QPFSDLKVND DTGQASNNSH TWREELSKID IWYATFGSNM KLSRFLCYIE GGQVEGMRKP CIGSLDKSKP KEIKWESFPH RLFFAREHTA
501: TWGPGGVAFL HPECNSDEKA YLCLYRITLE QFNDVLLQEN TSSFDMNYPL FDMTDLQSIE ERKCVPVEAV KNGWYHNVLY LGKENGIPIL TMTCQLSDVD
601: NFKSGKVGMC KPSKEYANTL IRGLVEGKQL SEEEATTYIQ EAASRAL

Best Arabidopsis Sequence Match ( AT5G61060.1 )
(BLAST)

001: MAMAGESSGK KIGDCDGKVA GNRQRKVGLI YDETMCKHDT PDGEDHPECP DRIRVIWEKL QLAGVSQRCV VLGSSKAEDK HLQLVHTKDH VNLVKSISTK
101: QKDYRRNRIA SQLNSIYLNG GSSEAAYLAA GSVVKLAEKV AEGELDCGFA IVRPPGHHAE ADEAMGFCLF NNVAVAASFL LNERPDLGVK KILIVDWDVH
201: HGNGTQKMFW KDPRVLFFSV HRHEYGGFYP AGDDGDYNMV GEGPGEGFNI NVPWDQGRCG DADYLAAWDH ILIPVAREFN PDVIFLSAGF DAAINDPLGG
301: CCVTPYGYSV MLKKLMEFAQ GKIVLALEGG YNLDSIAKSS LACVQVLLED KQIQGPPEAY PFESTWRVIQ AVRKRLCTYW PSLADELSWK LINQKTPTPI
401: ILISSSDSET EDNAQGLLDQ MSKLSIENPQ GTLLENHQVE PASTSWRADL AKVDVWYASF GSNMWKPRFL CYIQGGQVDG LKKVCVGSMD KSPPKETVWE
501: TFPHRLFFGR ESSVGWGVGG VAFTNPLANL IDQTHMCLYR ITLEQFNDVL SQENGLNVDS DSPVFDLAAL QLVDNKGSIL EAPLNSWYGN VVCLGKERDI
601: PILTMTCTLS AVEKFKSGEI PIRPPAKAYA NTLIRGLVEG GRLSKEEAEA YIDKAVSKPL

Arabidopsis Description

HDA05Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4K1Z5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.