CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012984.1-P	Field mustard	nucleus	96.31	96.91
CDY23088	Canola	nucleus	95.85	96.45
AT5G61060.2	Thale cress	cytosol	84.95	83.28
CDY16823	Canola	peroxisome	80.8	80.92
CDX87200	Canola	peroxisome	81.11	80.61
VIT_17s0000g07280.t01	Wine grape	cytosol	64.52	65.02
KRH56821	Soybean	nucleus	63.44	62.96
KRH03123	Soybean	cytosol	61.6	61.13
CDY42846	Canola	nucleus	46.54	58.61
GSMUA_Achr4P03250_001	Banana	cytosol	59.75	58.58
Solyc03g115150.2.1	Tomato	cytosol	57.76	58.11
TraesCS1A01G317100.1	Wheat	mitochondrion	33.95	55.67
TraesCS1B01G329500.1	Wheat	cytosol	33.03	55.13
TraesCS1D01G317100.1	Wheat	mitochondrion	33.18	54.82
Os07t0602200-01	Rice	cytosol, nucleus, plastid	56.37	52.81
EER97493	Sorghum	plastid	56.07	51.92
Zm00001d006780_P011	Maize	cytosol	55.76	51.56
TraesCS2A01G177100.1	Wheat	cytosol	54.53	51.23
TraesCS2D01G185200.1	Wheat	cytosol, golgi	54.38	51.08
TraesCS2B01G204100.1	Wheat	cytosol	54.22	50.94
HORVU1Hr1G066760.1	Barley	plastid	33.95	50.46
HORVU2Hr1G032540.2	Barley	plastid	56.07	49.8
CDY47012	Canola	cytosol	32.72	49.77
CDX82341	Canola	nucleus	24.58	36.04
CDY24487	Canola	cytosol, nucleus, peroxisome	25.96	31.07
CDX92243	Canola	nucleus	25.81	29.47
CDY06315	Canola	cytosol	16.9	28.5
CDY22682	Canola	cytosol	16.9	28.5
CDX68980	Canola	mitochondrion, plastid	16.59	25.41
CDX75356	Canola	plastid	16.44	25.18
CDY30008	Canola	nucleus	17.82	23.11
CDY21119	Canola	nucleus	17.67	22.91
CDX99186	Canola	cytosol	14.13	21.6
CDY52901	Canola	nucleus	15.05	21.03
CDY08684	Canola	cytosol, mitochondrion, nucleus, peroxisome	12.9	20.95
CDY16736	Canola	nucleus	14.75	20.43
CDY48127	Canola	nucleus	14.75	20.43
CDY48157	Canola	cytosol	12.44	20.3
CDY48160	Canola	cytosol	12.75	20.29
CDY21800	Canola	cytosol	12.44	20.2
CDY39570	Canola	cytosol	12.44	19.8
CDY39567	Canola	cytosol	12.29	19.7
CDX84385	Canola	cytosol	14.59	18.81
CDY41500	Canola	cytosol	14.75	16.84
CDX88212	Canola	cytosol, golgi, nucleus, plastid	10.14	16.62
CDX80555	Canola	cytosol, golgi, nucleus, plastid	8.6	14.97
CDY53952	Canola	plastid	3.99	10.7

Protein Annotations

EnsemblPlants:CDY02173	EnsemblPlantsGene:GSBRNA2T00113578001	Gene3D:3.10.490.10	Gene3D:3.40.800.20	GO:A0A078ERL0	InterPro:His_deacetylse
InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	InterPro:Ureohydrolase_dom_sf	PANTHER:PTHR10625	PANTHER:PTHR10625:SF177
PFAM:PF00850	PRINTS:PR01270	ProteinID:CDY02173	ProteinID:CDY02173.1	SEG:seg	SUPFAM:SSF52768
UniParc:UPI0004EEF013	MapMan:12.3.2.1.2	:	:	:	:

Description

BnaA03g39940D

Coordinates

chrLK031932:+:508970..512375

Molecular Weight (calculated)

72161.5 Da

IEP (calculated)

5.044

GRAVY (calculated)

-0.292

Length

651 amino acids

Sequence
(BLAST)

001: MAMAGDSSNN NFRDFDGELD GKSHRKVGLV YDETMCKHDT PNGEDHPECP DRIRVIWEKL QLAGVSQRCV VLGGSKAEDK HLQLVHTKDH VSLVKSLSTK
101: KKDYRRNRIA SQWNSIYLNG SSSEAAFLAA GSVVELAEKV AEGELDCGYA IVRPPGHHAE PDEAMGFCLF NNVAVAASYL LDERPELGVK KILVVDWDVH
201: HGNGTQKMFW KDPRVLFFSV HRHEHGGFYP AGDDGDYNMV GEGPGEGFNI NVPWEQGRCG DADYLAAWDH ILIPVAKEFN PDIVLLSAGF DAAIGDPLGG
301: CRVTPYGYSV MLKKLMEFAQ GKIVLALEGG YNLDSIAKSS LACVQVLLED KPIQGSSEAY PFESTWRVIQ AVRKKLSAYW PSLADVLSSN LIDQKTPTPI
401: IVFSSSDSET EDYADDILDQ MSRLNIENHH VDTASTSWRR DLSKVDVWYA SFGSNMWKPR FLCYIQGGQV EGMKKVCVGS MDKTPPKQIM WESFPHRLFF
501: GRESSVTWGV GGVAFINPLS DLNDRTHMCL YRITLEQFND VLFQENGLKV DSDSPLFDLD TLQLVEKKGS TPLASGGWYG DIVCLGKEGD IPILTMTCTL
601: SAFEKFKSGE IPLRPPSEAY VNTMVRGLVE GGRLSEEEAK AYIDNAASKP L

Best Arabidopsis Sequence Match ( AT5G61060.1 )
(BLAST)

001: MAMAGESSGK KIGDCDGKVA GNRQRKVGLI YDETMCKHDT PDGEDHPECP DRIRVIWEKL QLAGVSQRCV VLGSSKAEDK HLQLVHTKDH VNLVKSISTK
101: QKDYRRNRIA SQLNSIYLNG GSSEAAYLAA GSVVKLAEKV AEGELDCGFA IVRPPGHHAE ADEAMGFCLF NNVAVAASFL LNERPDLGVK KILIVDWDVH
201: HGNGTQKMFW KDPRVLFFSV HRHEYGGFYP AGDDGDYNMV GEGPGEGFNI NVPWDQGRCG DADYLAAWDH ILIPVAREFN PDVIFLSAGF DAAINDPLGG
301: CCVTPYGYSV MLKKLMEFAQ GKIVLALEGG YNLDSIAKSS LACVQVLLED KQIQGPPEAY PFESTWRVIQ AVRKRLCTYW PSLADELSWK LINQKTPTPI
401: ILISSSDSET EDNAQGLLDQ MSKLSIENPQ GTLLENHQVE PASTSWRADL AKVDVWYASF GSNMWKPRFL CYIQGGQVDG LKKVCVGSMD KSPPKETVWE
501: TFPHRLFFGR ESSVGWGVGG VAFTNPLANL IDQTHMCLYR ITLEQFNDVL SQENGLNVDS DSPVFDLAAL QLVDNKGSIL EAPLNSWYGN VVCLGKERDI
601: PILTMTCTLS AVEKFKSGEI PIRPPAKAYA NTLIRGLVEG GRLSKEEAEA YIDKAVSKPL

Arabidopsis Description

HDA05Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4K1Z5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.