Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39570 | Canola | cytosol | 94.13 | 94.13 |
| Bra018072.1-P | Field mustard | cytosol | 96.82 | 89.59 |
| CDY39567 | Canola | cytosol | 77.02 | 77.59 |
| CDY21800 | Canola | cytosol | 75.06 | 76.56 |
| CDY48157 | Canola | cytosol | 74.57 | 76.44 |
| AT5G35600.1 | Thale cress | cytosol | 62.1 | 62.1 |
| CDY16736 | Canola | nucleus | 56.48 | 49.15 |
| CDY48127 | Canola | nucleus | 56.23 | 48.94 |
| CDX84385 | Canola | cytosol | 56.23 | 45.54 |
| CDY08684 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 41.81 | 42.64 |
| CDX99186 | Canola | cytosol | 43.52 | 41.78 |
| CDY41500 | Canola | cytosol | 56.23 | 40.35 |
| CDY30008 | Canola | nucleus | 49.14 | 40.04 |
| CDY21119 | Canola | nucleus | 49.14 | 40.04 |
| CDY53952 | Canola | plastid | 21.52 | 36.21 |
| CDX88212 | Canola | cytosol, golgi, nucleus, plastid | 18.09 | 18.64 |
| CDX80555 | Canola | cytosol, golgi, nucleus, plastid | 16.14 | 17.65 |
| CDY06315 | Canola | cytosol | 15.89 | 16.84 |
| CDY22682 | Canola | cytosol | 15.89 | 16.84 |
| CDX75356 | Canola | plastid | 14.67 | 14.12 |
| CDX68980 | Canola | mitochondrion, plastid | 14.67 | 14.12 |
| CDY42846 | Canola | nucleus | 17.6 | 13.93 |
| CDX82341 | Canola | nucleus | 14.43 | 13.29 |
| CDY23088 | Canola | nucleus | 20.29 | 12.83 |
| CDY02173 | Canola | nucleus | 20.29 | 12.75 |
| CDY16823 | Canola | peroxisome | 19.07 | 12.0 |
| CDX87200 | Canola | peroxisome | 19.07 | 11.91 |
| CDY24487 | Canola | cytosol, nucleus, peroxisome | 15.65 | 11.76 |
| CDX92243 | Canola | nucleus | 15.65 | 11.23 |
| CDY47012 | Canola | cytosol | 11.74 | 11.21 |
| CDY52901 | Canola | nucleus | 9.29 | 8.15 |
Protein Annotations
| MapMan:12.3.2.1.1 | Gene3D:3.40.800.20 | GO:A0A078IBA6 | UniProt:A0A078IBA6 | EnsemblPlants:CDY48160 | ProteinID:CDY48160 |
| ProteinID:CDY48160.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004407 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006325 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016569 | GO:GO:0016575 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0032041 |
| GO:GO:0046872 | GO:GO:0070932 | EnsemblPlantsGene:GSBRNA2T00088972001 | InterPro:His_deacetylse | InterPro:His_deacetylse_1 | InterPro:His_deacetylse_dom |
| InterPro:His_deacetylse_dom_sf | InterPro:IPR037138 | PFAM:PF00850 | PIRSF:PIRSF037913 | PRINTS:PR01270 | PRINTS:PR01271 |
| PANTHER:PTHR10625 | PANTHER:PTHR10625:SF144 | SUPFAM:SSF52768 | UniParc:UPI0004EE98E1 | InterPro:Ureohydrolase_dom_sf | SEG:seg |
Description
BnaA06g16730DHistone deacetylase [Source:UniProtKB/TrEMBL;Acc:A0A078IBA6]
Coordinates
chrLK032757:-:82919..84621
Molecular Weight (calculated)
45498.8 Da
IEP (calculated)
4.824
GRAVY (calculated)
-0.216
Length
409 amino acids
Sequence
(BLAST)
(BLAST)
001: MENAASLASG PDGKKRRVTY FYDPYIGDGS QRVSQQISTT HKLIRSYHLH NDMDIIRPSL AKDSDFVQFH SPEYIACLAT LTPEYVDMAN KSENVAETTL
101: ELFDLDEWDT PFFPGLIDYC RLYAGGSICA AAKLNRSEAD IAINWSGGMH RAKRDEARGF GYVNDVVLGI LELLKVFKRV LYIDIGYYHG DAVQEAFYKT
201: DRVMTVSFHE SVVHCRGDIT DNGVEKGEYY SLNAPLKNGL DDASFVNLLV PVIHKAMEVY QPEAIVLQCG PDSLAGDALG KFNLTIEGHG ACLGYIRSFN
301: VPLLLLGGQG HTLGNVARYW CYETAVAVGK VIDDDLDTNV SDACFAPGYQ LHIEPNRMKN LNTDEYIAKI KKTLLNQLSQ VIHAPSVQFQ DTPPISQVTE
401: AAEEDMETR
101: ELFDLDEWDT PFFPGLIDYC RLYAGGSICA AAKLNRSEAD IAINWSGGMH RAKRDEARGF GYVNDVVLGI LELLKVFKRV LYIDIGYYHG DAVQEAFYKT
201: DRVMTVSFHE SVVHCRGDIT DNGVEKGEYY SLNAPLKNGL DDASFVNLLV PVIHKAMEVY QPEAIVLQCG PDSLAGDALG KFNLTIEGHG ACLGYIRSFN
301: VPLLLLGGQG HTLGNVARYW CYETAVAVGK VIDDDLDTNV SDACFAPGYQ LHIEPNRMKN LNTDEYIAKI KKTLLNQLSQ VIHAPSVQFQ DTPPISQVTE
401: AAEEDMETR
001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS
Arabidopsis Description
HDA9Histone deacetylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.